Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04023 ATGGGTTGCACCATGAGAGAAAAACACATCAGGGCTAATCGGAGACCGCGATCGGCGAAACCGGACCCGGATTCTTGCGACAAAGATGCGATATCCAAATCCATAGCCGAGTCTGGTCTCAAGCCCTTCAGATACCATACGGCTGCCAACGATTCTTCCCCGAGCCTAAATTCAAACCCTAATGTGGAGGAAACCGGGTGGGGTTACTGTACAGAGGAACAATTGGAAGAGATTCTGTTGAAAAACTTGGAGTTTATTTATAATGAAGCTGTCTCGAAGCTTGTTGCGTTGGGTTACGATGAGGATGTTGCTGTTAAGGCCATGCTGCGAAATGGGCATTGTTATGGTGGCATGGATGCCCTGACAAATATTTTGCACAATTCCTTAGCGTATTTAAATAGTAATAGTAATAGTCATAGTGATAGTAATAGTCATAGTGACGGTGGTGGTGGTGGTGGTGGTGGGAATATGAATGAAACTCAGCCTGTATTCTCTAATTTGAGGCAGTTAGAGGAGTACTCTGTGGCAGCTTTGGTGTGTTTGGTTCAACAGGTGAGGCCACATTTGAGCAAAGGTGATGCCATGTGGTGTTTGCTCATGAATGATCTTCATGTTGGGAGGGCTAGTTCTATGGATATTCCCGTGCCAGGTACTGGGAACACTGCTCCGGCTACCGGTGAGGCTGGTGGCAATTCGGTTGGTGTTATGGGGTCGGCTTTTTGTAGGTTTCACGGAGGGTGGGGATTTGGAAATGGGGGAGGCTTGGATTTTCCTGTGAATGGGGTATTCTCTTGTGGGACAGACATGAATTTGCAGCTACAAAGAGACATTGAGTTTCCGAAGAGGTTTAATCTTTCTCCTTCAATGAAGTCCTTATTGAAAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAACTCCAAGCAGTTGCAGGCTCAGGCAAAGACCATTTCTGGACGGAGTACTGCACATAGTTTGGATTCTTTTGCTGCGACCGGGACAGGAGTCCCGGCTGAGCAGTCTGGAGTAGATTCACAGAATGGCGATAACCAAGATGCTGTGAATTCGGTGCTGAGTAAATTTCGTGATTTGAATCTTGACGAGAATTTGGAGCTTGTGGCGGAAGATCAGAAGGATGAGGTCATAGTCACTTTATTTCATCAGATTAAGGATCTTGAGAAGCAGGTCAATGAGCGAAAAGACTGGGCTCATCAGAAGGCAATGCAGGCAGCTAGAAAGCTAAGCAGTGATCTAACTGAGCTCAAGATGTTGCGGATGGAAAGAGAGGAGACTCAGAAATTGAAGAAAGGGAAACCGGCCCTTGAGGACACAACCATGAAGAGGCTCTCGGAGATGGAGAATGCATTGAGAAAGGCCAGTGGTCAACTGGACCTTGCGAATGCAGCTGTGAGGAGACTAGAAACTGAGAATGCAGAAATGAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTCACAGCTTGCTTAGAAGTTGCAAAAAGGGAGAAAAAATGTTTAAAAAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGCAAGAGATTTCTGGTGAAAAACAGAAGATATCAGAGACACAAGAAATGTTGGTTCAGATTAGACAGTGTCAAAAGGAGGCTGAGGTGAAGTGGAAGGAGGAGTTGAAGGGCAAAGAGGAAGCCTTAGCAGTGGTTGAGGAGGAACGGCGCTCTAAGGAAGCAGCTGAATCTAATAATAAGAGGAGGATTGAGGCATTGCGTCTGAAGATAGAAATAGATTTCCAGCGTCACAAGGATGATCTACTAAGACTGGAGCAGGAACTGTCGCGCCTTAAAGCCTCTGCTCAGTCTGCTGAGTTGCATCACCAATCAAGCACTTCACCCACAAGCAACTCTGAGGGCACAAAGCCCCAAAGAGAGACCATTGCTAGGCTGCTTCAACAATTAGATAACCTGGACCATTTTTCAGATAAAGAAGTCAATAGCAACAGAGAATGCATTATATGTATGAAGGATGAAGTCTCCATTGTTTTCTTGCCATGTGCACACCAAGTTATGTGTGCTACTTGCAGTGATGAGTATGGAAGAAAAGGTGGTAAGGCTGCTTGTCCCTGCTGCAGGGTTCAAATTCAACAGAGAATTCGTGTATTTGGGGCAAGTTCCTAG 2178 0.4559 MGCTMREKHIRANRRPRSAKPDPDSCDKDAISKSIAESGLKPFRYHTAANDSSPSLNSNPNVEETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVKAMLRNGHCYGGMDALTNILHNSLAYLNSNSNSHSDSNSHSDGGGGGGGGNMNETQPVFSNLRQLEEYSVAALVCLVQQVRPHLSKGDAMWCLLMNDLHVGRASSMDIPVPGTGNTAPATGEAGGNSVGVMGSAFCRFHGGWGFGNGGGLDFPVNGVFSCGTDMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQAQAKTISGRSTAHSLDSFAATGTGVPAEQSGVDSQNGDNQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVNERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPALEDTTMKRLSEMENALRKASGQLDLANAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISGEKQKISETQEMLVQIRQCQKEAEVKWKEELKGKEEALAVVEEERRSKEAAESNNKRRIEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHHQSSTSPTSNSEGTKPQRETIARLLQQLDNLDHFSDKEVNSNRECIICMKDEVSIVFLPCAHQVMCATCSDEYGRKGGKAACPCCRVQIQQRIRVFGASS 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04023 725 Coils Coil 506 540 - -
Viun3g04023 725 Coils Coil 552 582 - -
Viun3g04023 725 Pfam Zinc finger, C3HC4 type (RING finger) 667 716 - -
Viun3g04023 725 SUPERFAMILY RING/U-box 658 717 - -
Viun3g04023 725 MobiDBLite consensus disorder prediction 618 641 - -
Viun3g04023 725 Pfam Family of unknown function (DUF6592) 82 211 IPR046527 -
Viun3g04023 725 CDD RING-HC_MIP1-like 665 720 - -
Viun3g04023 725 ProSiteProfiles Zinc finger RING-type profile. 670 711 IPR001841 -
Viun3g04023 725 PANTHER OS05G0141500 PROTEIN 1 720 IPR046934 -
Viun3g04023 725 SMART ring_2 670 710 IPR001841 -
Viun3g04023 725 MobiDBLite consensus disorder prediction 135 149 - -
Viun3g04023 725 Coils Coil 598 625 - -
Viun3g04023 725 MobiDBLite consensus disorder prediction 16 30 - -
Viun3g04023 725 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 722 IPR013083 -
Viun3g04023 725 MobiDBLite consensus disorder prediction 1 30 - -
Viun3g04023 725 MobiDBLite consensus disorder prediction 135 161 - -
Viun3g04023 725 Coils Coil 450 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04023 Viun-Chr3 47829118 47834958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04023 665 721 C3H Transcription Factor Family AT1G73950 38.596 1.31e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04023 - - gmx:100777787 1169.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02260 2 30244924 30248409 Viun3g04023 3 47829118 47834958 PCT