Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04018 ATGCCAGTTCCACTTGCCCCCTACCCTGCACCACCAACTCCTTATACACCACCTGCTAATGGTGCACAGAGTCAACTTGTCTGTTCTGGATGTAGAAACCTTCTGATGTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGCTAGTTTGCGGAGGTTGCCATACACTACTCATGTACATCCGAGGAGCGACAAATGTGCAATGTTCTTGTTGTCACACGGTGAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTGATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCAATGCGACAACAAGCACCACTGAGCAGAAGTTCAACACTGTAACCATACAATAG 456 0.4846 MPVPLAPYPAPPTPYTPPANGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATNVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGANATTSTTEQKFNTVTIQ 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04018 151 Pfam LSD1 zinc finger 105 129 IPR005735 -
Viun3g04018 151 Pfam LSD1 zinc finger 67 91 IPR005735 -
Viun3g04018 151 Pfam LSD1 zinc finger 28 52 IPR005735 -
Viun3g04018 151 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
Viun3g04018 151 PANTHER PROTEIN LSD1 13 55 IPR040319 -
Viun3g04018 151 NCBIfam zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Viun3g04018 151 NCBIfam zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Viun3g04018 151 NCBIfam zinc finger domain, LSD1 subclass 64 93 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04018 Viun-Chr3 47790101 47792271 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Viun3g04018 zf-LSD1 9.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04018 - - cit:102618163 266.929