Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04014 ATGGACGCTCGCGAACCGCCCCGACCACAGCCGCCCTCCATCATGGGGGGCCCCACCTCCTATGCCCCCACCAACATCGGCCCTAATTCCTCCGGTGCCGTCATGATGGCGCCCGCCACCGCGCGATTTCCCTTCGGCGTCGTGCCGCCGCCGCAACAACAGCCTCCGCCAGCGTCGGAGCCTTTCCCTGTCTCCCCTTCAGCCGCCTACGACGGCTCTTCCTCGCCGATGAAGCCATGCTCGCTCGCCAAGAAGAAACGCGGTCGTCCCCGGAAGTACTCGCCGGACGGTAACATTGCCCTCGGCCTCGCTCCTACCCATACCTCCCCTCCTCCACCTTCCTCCGCCGCCGCTTCCGGCGGAGGTATAGGTGGTGATTCGGCCGTTACTGCCTCCGCCGATGCTTCGGCGAAGAAGCACCGAGGAAGGCCTCCCGGGTCTGGGAAGAAACAGCTGGATGCTCTCGGAGCTGGTGGGGTTGGATTCACTCCCCACGTGATCTTGGTGGAGTCTGGCGAGGATATCACGGCAAAAATTATGTCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTTTCGGCTATTGGTGCAATCTGTAATGTTACCCTTAGACAACCTGCACTATCCGGTGGTACGGCAACATACGAGGGCCGATTTGAGATTATATCATTATCAGGTGCCATGCAACAATCTGAAAGTAATGGCGAACGTAGCAGAACATGCACTTTGAATGTAACCCTTGCAGGATCCGATGGACGTGTTTTGGGTGGCGGAGTTGCTGGAACGCTAACTGCAGCATCAACTGTACAGGTAATAGTGGGTAGCTTTATTGTGGATGGAAAAAAGTCGAATTCGAATGTCCTCAAATCTGGGCCTTCTTCTGCACCAACACCCCAAATGCTAACATTTGGTGCACCCATATCTCCAACTAGTCCTACTTCTCAAGGGCCTTCAACTGAGTCCTCTGAGGAACATGACCACACTCCTTTTTGTAGGGGGCCTGGGTCTGGGCCTGGACCTGGACTCTACAACAATACTAGTCAGCCCGTGCATAATATGCCCATGTACCATCATCCGCTATGGGCTGGCCAAACTCATCAGTGA 1107 0.5601 MDAREPPRPQPPSIMGGPTSYAPTNIGPNSSGAVMMAPATARFPFGVVPPPQQQPPPASEPFPVSPSAAYDGSSSPMKPCSLAKKKRGRPRKYSPDGNIALGLAPTHTSPPPPSSAAASGGGIGGDSAVTASADASAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVESGEDITAKIMSFSQQGPRTVCILSAIGAICNVTLRQPALSGGTATYEGRFEIISLSGAMQQSESNGERSRTCTLNVTLAGSDGRVLGGGVAGTLTAASTVQVIVGSFIVDGKKSNSNVLKSGPSSAPTPQMLTFGAPISPTSPTSQGPSTESSEEHDHTPFCRGPGSGPGPGLYNNTSQPVHNMPMYHHPLWAGQTHQ 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04014 368 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Viun3g04014 368 SMART AT_hook_2 138 150 IPR017956 GO:0003677
Viun3g04014 368 MobiDBLite consensus disorder prediction 17 31 - -
Viun3g04014 368 ProSiteProfiles PPC domain profile profile. 158 298 IPR005175 -
Viun3g04014 368 MobiDBLite consensus disorder prediction 285 368 - -
Viun3g04014 368 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 53 326 IPR039605 GO:0003680
Viun3g04014 368 CDD DUF296 163 277 IPR005175 -
Viun3g04014 368 MobiDBLite consensus disorder prediction 1 16 - -
Viun3g04014 368 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 277 IPR005175 -
Viun3g04014 368 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 278 - -
Viun3g04014 368 MobiDBLite consensus disorder prediction 1 151 - -
Viun3g04014 368 Gene3D - 164 289 - -
Viun3g04014 368 MobiDBLite consensus disorder prediction 44 63 - -
Viun3g04014 368 MobiDBLite consensus disorder prediction 285 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04014 Viun-Chr3 47710710 47716064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04014 9 368 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 42.446 2.99e-75 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04014 - - gmx:100789717 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02256 2 30220318 30224510 Viun3g04014 3 47710710 47716064 PCT