Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04011 ATGTCTATGGCTGGTTTGGATTTAGGAAGTGCTTCACGCTTTGTTCCAAACCTTCACAGACCAGACTTGCACTTGCAGCAACTCCATCACGATTCAGAGGACCAAGAGACGCCGCCGCAGAACCGCGGAGGGTTGCCGTTCGATGACGATGACCGAAGCCAAGGATTGGAGCTAGCTTCCACTGGTTCCGGTGACGTGGTCGGTCGGCGTCCACGTGGAAGGCCGCCGGGATCCAAGAACAAGCCGAAACCGCCGGTGATAATCACGCGGGAGAGCGCCAACACGCTCCGAGCGCACATCCTCGAGGTCGGAAGCGGCTCCGACATCTTCGACTGCGTCACCACCTACGCGCGCCGCCGCCAGCGCGGGATCTGCATCCTCAGCGGTAGCGGCACCGTCACCAATGTCAGCCTCCGCCAGCCCGCCGCTGCTGGAGCCGTCGTCACGCTCCATGGCCGCTTCGAGATTCTTTCCCTCTCCGGCTCCTTCCTCCCGCCGCCGGCTCCGCCCGGGGCTACCAGCCTCACTATCTACGTGGCCGGAGGGCAGGGCCAGGTGGTCGGTGGAAACGTGGTTGGGGAGCTGACTGCAGCGGGGCCGGTGATCGTCATCGCGGCGTCGTTCACGAACGTAGCCTACGAGAGGCTACCGTTAGAAGAAGAAGAACAGCTTCAGATTCAGGCACCTGCTACGACGTCGTCTCATGGCGTTGGAAATAACAACGGCAACAATAGCAATAACAACTCTTTCCCTGACCCTTCTTCGGGACTTCCCTTCTTCAATTTACCTCTGAATATGCAGAACGTTCAGTTACCCGGAGAGGGTTGGGGGGGAAACGCTGCTTCACGTCCACCACCTTTTTGA 864 0.5972 MSMAGLDLGSASRFVPNLHRPDLHLQQLHHDSEDQETPPQNRGGLPFDDDDRSQGLELASTGSGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGSDIFDCVTTYARRRQRGICILSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYVAGGQGQVVGGNVVGELTAAGPVIVIAASFTNVAYERLPLEEEEQLQIQAPATTSSHGVGNNNGNNSNNNSFPDPSSGLPFFNLPLNMQNVQLPGEGWGGNAASRPPPF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04011 287 MobiDBLite consensus disorder prediction 230 256 - -
Viun3g04011 287 FunFam AT-hook motif nuclear-localized protein 96 223 - -
Viun3g04011 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 252 IPR014476 GO:0003680
Viun3g04011 287 Pfam Plants and Prokaryotes Conserved (PCC) domain 97 210 IPR005175 -
Viun3g04011 287 ProSiteProfiles PPC domain profile profile. 93 230 IPR005175 -
Viun3g04011 287 Gene3D - 96 234 - -
Viun3g04011 287 MobiDBLite consensus disorder prediction 23 37 - -
Viun3g04011 287 MobiDBLite consensus disorder prediction 22 87 - -
Viun3g04011 287 PIRSF ESCAROLA 11 286 IPR014476 GO:0003680
Viun3g04011 287 CDD DUF296 97 172 IPR005175 -
Viun3g04011 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 93 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04011 Viun-Chr3 47680528 47682109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04011 3 285 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 67.541 8.31e-105 305