Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04010 ATGTGGAATCCAAGGGACCAAGAAGATGACTCCTGGGAGGTCAGAGCCTTCGCAGAGGACACCAGCAACATCATGGGCACCACTTGGCCTCCAAGGTCCTACACCTGCACTTTCTGTAGAAGGGAGTTCCGTTCAGCACAAGCCCTCGGTGGCCACATGAACGTTCACCGCCGCGACCGTGCTCGCCTCCACCAAGCCTCACCCGTCAACAACCACTACCACTACCACCACCACATCTCCTCTCTCTCCCGCTCACACCACTCGCCCTCTTTTCTCAACCTCCCTCACTCTCCGGACCCTTTCGCAAATGGTGGGGTGTGCCTCCTGTACCCCTTCCCTAGCCCTAACACTGCTCCATTCTCCCCTCTTGGCCACACCACTAGTTTCAATAATGCATGTGCCGACTCTCCCTCCTCTCTTTTCTCTGTCTCCTCTTCCCTTTCACACCCTCTCCCAACTTCCTCAAATGCCTCCTTTGATTTCCCGGTGGCGCAGCCTGCCACAGGGAGGAGGACCCTTTTCTCTTCTTATTCTGGGAAAGAGGAACAAGAACCCGCAACCTCCTCCGCTCGTCACGGCCAACACGAGGAGCTTGATCTAGAGCTCCGTTTGGGAAATAGATCAACATAA 630 0.5556 MWNPRDQEDDSWEVRAFAEDTSNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQASPVNNHYHYHHHISSLSRSHHSPSFLNLPHSPDPFANGGVCLLYPFPSPNTAPFSPLGHTTSFNNACADSPSSLFSVSSSLSHPLPTSSNASFDFPVAQPATGRRTLFSSYSGKEEQEPATSSARHGQHEELDLELRLGNRST 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04010 209 PANTHER OS07G0101800 PROTEIN 6 207 - -
Viun3g04010 209 SUPERFAMILY beta-beta-alpha zinc fingers 31 61 IPR036236 -
Viun3g04010 209 MobiDBLite consensus disorder prediction 185 209 - -
Viun3g04010 209 MobiDBLite consensus disorder prediction 172 209 - -
Viun3g04010 209 SMART c2h2final6 34 56 IPR013087 -
Viun3g04010 209 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Viun3g04010 209 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Viun3g04010 209 Pfam C2H2-type zinc finger 34 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04010 Viun-Chr3 47630508 47632017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04010 1 205 C2H2 Transcription Factor Family AT4G17810 38.967 1.26e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun3g04010 zf-C2H2_6 4.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04010 - - vum:124830394 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04010 3 47630508 47632017 Viun3g04010 3 47630508 47632017 ECH
Viun2g02253 2 30191246 30192749 Viun3g04010 3 47630508 47632017 PCT