Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04001 ATGACGGAGGAGTTAAAGAAACCAGTGGATGATGCATCAGCACCCAGCTGGTTATCTGATTTGGACATGGATGATTACAATTTATTTCCAGATGAGTGTGGCCTGAACTTGAACTTCTTCGATGACCAAGATATTCTACCAGAACACATTGCCAGTGCCCTTGAAGAACAGACACAGAACCTGCAGCGATCTTTGTCTTCGGAGTGCCCTTCCAAAACCGTGAGCAACTCATCCACTGATGAAACCAGTTTTGACTTTGAGAGACCAGCCAAGTTACTGAAAACGACAAGCGGTAGTTGCTGTAACTCTGACTCATCCACCATCACCAACAACCTCTCGCCAAAACTTTCCCCATCCACATCCTTCTCCTCCTTTCAGTCTCAGATTCTGTCTTTTGACAACCCTAACTCCTCCCCTCCCAACACCACCACCCAGTTTTATGGCTTTGACTTAAACCCAACGCACAACGAAATGGTGTCACTGTCACTGCCCCAATTGACAAAATCACGCTTCCCTGATCAAACGCCAAAAGGCTCCTCAAAAAATCACAACTTTGAATCAAAACCCTCGCATGGTAAGAGATCTCCTGCTCACGCTCAGGATCACATCATGGCCGAGAGAAAGCGACGAGAGAAGCTCAGCCAGAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTAGGGGACGCTATCAAATACGTGAAAGATCTTAAAGAGCGTTTGGCAGTGCTTGAAGAGCAGAGCAAGAAAACAAGGGAAGAATCGGTGGTGGTCCTGAACAAACCAGACCTCTCTGGCGATGATGATTCTTCTTCATGTGATGAGAGCATTGATGCTGATAGTGTCAGTGACACTCAGTTTGAGGTGGAATCAAGAGTGTCAGGGAAGGAGATGCTGCTTCGGATCCACTGTTTGAAGCAAAAGGGTCTTCTCGTCAAATTACTAGCCGAGATTCAGAGAAATAACCTACTCGTTATTAATAGCAGCATCTTACCATTCGGTGATTCTATCCTTGACATTACCATAGTTGCTCAGATGGGAGAAAATTACAATTTGACCACGAAGGAACTTGTGAAGAACCTACGCGTGGCGGCATATAAGATTGCCTCATAA 1140 0.4588 MTEELKKPVDDASAPSWLSDLDMDDYNLFPDECGLNLNFFDDQDILPEHIASALEEQTQNLQRSLSSECPSKTVSNSSTDETSFDFERPAKLLKTTSGSCCNSDSSTITNNLSPKLSPSTSFSSFQSQILSFDNPNSSPPNTTTQFYGFDLNPTHNEMVSLSLPQLTKSRFPDQTPKGSSKNHNFESKPSHGKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKDLKERLAVLEEQSKKTREESVVVLNKPDLSGDDDSSSCDESIDADSVSDTQFEVESRVSGKEMLLRIHCLKQKGLLVKLLAEIQRNNLLVINSSILPFGDSILDITIVAQMGENYNLTTKELVKNLRVAAYKIAS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04001 379 MobiDBLite consensus disorder prediction 168 183 - -
Viun3g04001 379 CDD bHLH_AtNAI1_like 198 270 - -
Viun3g04001 379 Coils Coil 236 263 - -
Viun3g04001 379 Gene3D - 190 264 IPR036638 GO:0046983
Viun3g04001 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 263 IPR036638 GO:0046983
Viun3g04001 379 SMART finulus 203 252 IPR011598 GO:0046983
Viun3g04001 379 Pfam Helix-loop-helix DNA-binding domain 201 246 IPR011598 GO:0046983
Viun3g04001 379 MobiDBLite consensus disorder prediction 184 208 - -
Viun3g04001 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Viun3g04001 379 MobiDBLite consensus disorder prediction 168 208 - -
Viun3g04001 379 PANTHER BHLH TRANSCRIPTION FACTOR 59 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04001 Viun-Chr3 47568912 47571265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04001 88 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.924 3.76e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g04001 HLH 4.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04001 - - var:108333272 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04001 3 47568912 47571265 Viun3g04001 3 47568912 47571265 ECH