Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04000 ATGACCTCAATGGAGGAATCATGGACTAGTTGGCTCTGTGATATGGAGCCAGATGATTACAGTTTCATCGGTCAATCAGACATAAAGGTGGAGGATGTGAATGGAAGTTTAGCATCTCCATGTGATATAGCCACTGCATTAGAAGAGAACCCGCAGAGCTCATTTTCCACTGAGAGTCACTCTGAGAGTGGCATAGAAGAGAGGCCTTTGAAGTTGCTCAAGACATGCACTTCAAACTCTGCCAAAACAGACCAACTCTCACAAATGAAAGCTTCCATACCCTGCTCCTATATTCTTTCCTTTGACAACACCAATCCACCAACAACAAAGGTTGAATCGGCTATAAAGCCAGAAACCAAGGTTGCGAATCGTGGGATATCTCTGCCTTCGAAGAATGAACCAAAACGTGTTACTCAGGAGAGCAAGAAAACGGGCTCATCAGCCAGATCTTCTCATCACACACAAGATCACATAATCGCGGAGAGAATGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCCCTCTCATCCCTTATTCCAGACCTCAAAAAGATGGACAAGGTGTCTGTATTGGTGGAAGCTATAAGGTACGTGAAGGAGCTGAAGGAAAAAGTGAAAGTGATGGAGGAACAGGGCAAAAGGAAAAGGCAGGAACCGGTGACGCGTGGGAAGAAAGCTCAGGAGGACGAGGATGTCTCAGACACTTCATCAAATTCCTGTGAGTTCGGAAATTCTGAAGATCCCTCATCCAAAATAAATCTTTTACTGCCAGAAGTCGAAGCAAGGGTGTCAAAGAGGAACGTGCTGATTCGAATCCTCTGCGAGAAAGAAAAGGTAGTGCTGGCCAACATTTTTAGAGAGATAGAGAAACTTCATCTCTCAGTCATCAATAGCAGCGCCTTATCTTTCGGTTCCTCTGTTCTCGACACAACCATCGTGGCCGAGATGGAGGATGAATTCAACATGAGCGTGAAGGAACTGGCAGGAAATCTGAGAGTACGACTGATGCAGTTTATGTAG 1020 0.452 MTSMEESWTSWLCDMEPDDYSFIGQSDIKVEDVNGSLASPCDIATALEENPQSSFSTESHSESGIEERPLKLLKTCTSNSAKTDQLSQMKASIPCSYILSFDNTNPPTTKVESAIKPETKVANRGISLPSKNEPKRVTQESKKTGSSARSSHHTQDHIIAERMRREKISQQFIALSSLIPDLKKMDKVSVLVEAIRYVKELKEKVKVMEEQGKRKRQEPVTRGKKAQEDEDVSDTSSNSCEFGNSEDPSSKINLLLPEVEARVSKRNVLIRILCEKEKVVLANIFREIEKLHLSVINSSALSFGSSVLDTTIVAEMEDEFNMSVKELAGNLRVRLMQFM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04000 339 Coils Coil 191 218 - -
Viun3g04000 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Viun3g04000 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 218 IPR036638 GO:0046983
Viun3g04000 339 Pfam Helix-loop-helix DNA-binding domain 156 201 IPR011598 GO:0046983
Viun3g04000 339 Gene3D - 149 223 IPR036638 GO:0046983
Viun3g04000 339 MobiDBLite consensus disorder prediction 118 156 - -
Viun3g04000 339 PANTHER BHLH TRANSCRIPTION FACTOR 50 338 - -
Viun3g04000 339 MobiDBLite consensus disorder prediction 208 232 - -
Viun3g04000 339 MobiDBLite consensus disorder prediction 208 248 - -
Viun3g04000 339 SMART finulus 158 207 IPR011598 GO:0046983
Viun3g04000 339 MobiDBLite consensus disorder prediction 135 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04000 Viun-Chr3 47546107 47547860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04000 96 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.600 1.10e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g04000 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04000 - - gmx:100803386 457.988