Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03999 ATGACCCAAATCTCATCGACCGTGTACTTGCCTGACTTTGTAAGCACAGGAATGGAGGACCCCACTTTGTTTCATCAATACCCGATGGATTCCTTTCCATTCCAGCTCGATGATTTTGACTTTGAGTCCTTCTCCGCGTCCCCAAAGGGTTCTTCCTCTCACAAGCGCTTGAGCTCCGAAAGCACACAAAACTCTTCCCTCACTCAAAGTCCTGAAACTTCCGTTGCTCCACCAAGACCAACAAAGCAACCCAAGACTACTATGAGTACCTGGACTGCTTACGGCACTGACATCATAGCTCCCAAGGCTGCTTCCTCTTCGTCCTCCAAAATCATCTCCTTTGACAAATCCAATGCCTCTTCTGTTTCTTCTCAACAATTCTACAAACTAGATGCTGCAAAACCGCTGAAGAAGCCTAAAATTGAAACTGGGTATGGTGAGAACCTGGATTTTTCTGCTGTGGCTTCTCAAAGTTTCTATGACAACAATAGTTTTCTAGACTATGATAAGCAAGAGAAAAAGGCTGCAGCTACAATGGCTAGAAACCCAACCCAAGCTCAAGATCACGTCATAGCCGAAAGAAAACGAAGGGAAAAGCTCAGCCAGAGGTTCATTGCTCTTTCGGCCTTAGTTCCTGGACTCAAGAAGACAGACAAGGCTACCGTCCTGGAAGATGCTATAAAGTACGTGAAACAATTACAAGAACGGGTAAAGATTCTGGAGGAACAAACTGTGGATAAAACAGTCGAATCTGCAGTGTTTGTGAAGAGATCTGTTGTCTTCGCCGGAGATGACAGCTCCTACTCCGGTGAAAACTCTGACCAGTCACTCCCCGAAATCGAAGCAAGAATTTCTGGTAAAGAGGTACTCGTCAGGCTCCATTGCGACAAACACAGTGGACGAACAGGTGCTATACTAAGGGAATTAGAGAAGCATAATCTCACAGTTCAGAGTAGCAGCTTTTTACCCTTTGGAAATAACACTCTTGACATAACTATTGTTGCTAAGATGGAGAAGGACTACTGCTTGACTGCGAAAGATCTCATAAGAAGCTTAAGTCAGTGTCTGAGGCAGCTTTCATAG 1083 0.4488 MTQISSTVYLPDFVSTGMEDPTLFHQYPMDSFPFQLDDFDFESFSASPKGSSSHKRLSSESTQNSSLTQSPETSVAPPRPTKQPKTTMSTWTAYGTDIIAPKAASSSSSKIISFDKSNASSVSSQQFYKLDAAKPLKKPKIETGYGENLDFSAVASQSFYDNNSFLDYDKQEKKAAATMARNPTQAQDHVIAERKRREKLSQRFIALSALVPGLKKTDKATVLEDAIKYVKQLQERVKILEEQTVDKTVESAVFVKRSVVFAGDDSSYSGENSDQSLPEIEARISGKEVLVRLHCDKHSGRTGAILRELEKHNLTVQSSSFLPFGNNTLDITIVAKMEKDYCLTAKDLIRSLSQCLRQLS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03999 360 PANTHER BHLH TRANSCRIPTION FACTOR 27 357 - -
Viun3g03999 360 FunFam Basic helix-loop-helix family protein 181 250 - -
Viun3g03999 360 Coils Coil 223 250 - -
Viun3g03999 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 233 IPR011598 GO:0046983
Viun3g03999 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 244 IPR036638 GO:0046983
Viun3g03999 360 CDD bHLH_AtNAI1_like 186 258 - -
Viun3g03999 360 SMART finulus 190 239 IPR011598 GO:0046983
Viun3g03999 360 MobiDBLite consensus disorder prediction 45 88 - -
Viun3g03999 360 Pfam Helix-loop-helix DNA-binding domain 187 234 IPR011598 GO:0046983
Viun3g03999 360 Gene3D - 175 248 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03999 Viun-Chr3 47520511 47523157 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03999 167 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.256 6.39e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g03999 HLH 8.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03999 - - gmx:100798011 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03999 3 47520511 47523157 Viun3g03999 3 47520511 47523157 ECH
Viun2g02250 2 30164328 30167163 Viun3g03999 3 47520511 47523157 PCT