Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03997 ATGACCCAAATCTCATCGACCGTGTACTTGCCTGACTTTGGAATGGAGGACCCCACTTTGTTTCATCAATACCCGATGGATTCCTTTCCATTCCAGCTCGATGATTTTGACTTTGAGTCCTTCTCCGCGTCCCCAAAGGGTTCTTCCTCTCACAAGCGCTTGAGCTCCGAAAGCACACAAAACTCTTCCCTCACTCAAAGTCCTGAAACTTCCGTTGCTCCACCAAGACCAACAAAGCAACCCAAGACTACTATGAGTACCTGGACTGCTTACGGCACTGACATCATAGCTCCCAAGGCTGCTTCCTCTTCGTCCTCCAAAATCATCTCCTTTGACAAATCCAATGCCTCTTCTGTTTCTTCTCAACAATTCTACAAACTAGATGCTGCAAAACCGCTGAAGAAGCCTAAAATTGAAACTGGGTATGGTGAGAACCTGGATTTTTCTGCTGTGGCTTCTCAAAGTTTCTATGACAACAATAGTTTTCTAGACTATGATAAGCAAGAGAAAAAGGCTGCAGCTACAATGGCTAGAAACCCAACCCAAGCTCAAGATCACGTCATAGCCGAAAGAAAACGAAGGGAAAAGCTCAGCCAGAGGTTCATTGCTCTTTCGGCCTTAGTTCCTGGACTCAAGAAGACAGACAAGGCTACCGTCCTGGAAGATGCTATAAAGTACGTGAAACAATTACAAGAACGGGTAAAGATTCTGGAGGAACAAACTGTGGATAAAACAGTCGAATCTGCAGTGTTTGTGAAGAGATCTGTTGTCTTCGCCGGAGATGACAGCTCCTACTCCGGTGAAAACTCTGACCAGTCACTCCCCGAAATCGAAGCAAGAATTTCTGGTAAAGAGGTACTCGTCAGGCTCCATTGCGACAAACACAGTGGACGAACAGGTGCTATACTAAGGGAATTAGAGAAGCATAATCTCACAGTTCAGAGTAGCAGCTTTTTACCCTTTGGAAATAACACTCTTGACATAACTATTGTTGCTAAGATGGAGAAGGACTACTGCTTGACTGCGAAAGATCTCATAAGAAGCTTAAGTCAGTGTCTGAGGCAGCTTTCATAG 1074 0.4488 MTQISSTVYLPDFGMEDPTLFHQYPMDSFPFQLDDFDFESFSASPKGSSSHKRLSSESTQNSSLTQSPETSVAPPRPTKQPKTTMSTWTAYGTDIIAPKAASSSSSKIISFDKSNASSVSSQQFYKLDAAKPLKKPKIETGYGENLDFSAVASQSFYDNNSFLDYDKQEKKAAATMARNPTQAQDHVIAERKRREKLSQRFIALSALVPGLKKTDKATVLEDAIKYVKQLQERVKILEEQTVDKTVESAVFVKRSVVFAGDDSSYSGENSDQSLPEIEARISGKEVLVRLHCDKHSGRTGAILRELEKHNLTVQSSSFLPFGNNTLDITIVAKMEKDYCLTAKDLIRSLSQCLRQLS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03997 357 CDD bHLH_AtNAI1_like 183 255 - -
Viun3g03997 357 SMART finulus 187 236 IPR011598 GO:0046983
Viun3g03997 357 Gene3D - 172 245 IPR036638 GO:0046983
Viun3g03997 357 PANTHER BHLH TRANSCRIPTION FACTOR 24 354 - -
Viun3g03997 357 MobiDBLite consensus disorder prediction 42 85 - -
Viun3g03997 357 Pfam Helix-loop-helix DNA-binding domain 184 231 IPR011598 GO:0046983
Viun3g03997 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 230 IPR011598 GO:0046983
Viun3g03997 357 FunFam Basic helix-loop-helix family protein 178 247 - -
Viun3g03997 357 Coils Coil 220 247 - -
Viun3g03997 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 241 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03997 Viun-Chr3 47520511 47523264 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03997 164 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.256 6.26e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g03997 HLH 8.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03997 - - gmx:100798011 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03997 3 47520511 47523264 Viun3g03997 3 47520511 47523264 ECH
Viun2g02249 2 30153422 30155597 Viun3g03997 3 47520511 47523264 PCT