Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03993 ATGCGACTCTTCCTCTGCTCCATCTTCTTCTTCCTCTTCCATTCTCACACACTCCATGCTGCGCGCATCTCTGAATATCGCGCGCTTCTCTCTTTTAAAGACTCTTCCATAACCGACGATCCTACGCATGCTCTCTCCTCCTGGAACACCACCACTCCCTACTGTTCCTGGTTCGGTGTCACGTGCGACTCGCGCCGCCACGTCACCACCCTTAACCTCACCTCCTTGTCCCTCTCCGGCACACTCTACGATGACCTCTCCCACCTCCCTTTCCTCTCCTACCTCTCTCTCGCCGACAACCAGTTCTCCGGCCCAATCCCCGCCTCCTTCTCCGCACTCTCCGCCCTCCGCCATCTCAACCTCTCCAACAACGCCTTCAACACCACCTTCCCCTCCAACCTCGCCCGCCTCGTCAATCTCCAAGTCCTTGACCTCTACAACAACAACATGACGGGTCCCCTTCCCCTCGCCGTCGCCGCCATGCCCCTCCTCCGCCACCTCCACCTCGGGGGCAACTTTTTCTCCGGCCAGATCCCTCCCGAGTATGGTACCTGGCAGCACCTCCAGTACCTCGCCGTGTCCGGCAACGAGCTCACGGGGAACATCCCTCCGGAGCTTGGAAACCTCACCGCGCTTCGCGAGCTCTACATTGGCTACTACAACGCTTACTCCGGCGGCATACCGCCGGAGATGGGAAACCTGTCCCAGCTTGTCCGTTTCGACGCCGCGTATTGCGGACTCTCTGGCGAGATTCCGGCTGATATCGGAAGGCTTCAGAATATGGACACGCTCTTTCTTCAGGTGAATGCGCTCTCCGGCTCGCTCACTCCTGAACTGGGGAACCTGAAGAGTCTCAAGTCGATGGATCTGTCCAACAACGTTCTCTCCGGCGAGGTTCCGGCGAACTTTGCGGAGCTCAAGAATCTCACCTTGCTGAACCTCTTCCGGAACAAGCTCCACGGTGCCATTCCCGAGTTTGTCGGCGAGTTACCGGCGCTGGAAGTTTTGCAGCTCTGGGAGAACAACTTCACCGGAAGCATTCCTCGGAGTTTGGGAAGAAATGGAAAACTCACTCTCGTTGATCTTTCTTCGAACAAGTTGACGGGAATGCTTCCCCCTGATATGTGTTACGGGAATCGTCTTCAGACTCTGATAACTCTTGGAAATTATCTGCTCGGTCCAATTCCTGATTCGCTTGGGAAGTGCGAGTCTCTGACTAGGATTCGAATGGGGGAGAACTTTCTTAATGGTTCTATTCCTGTTGGGCTATTTGGGCTTCCCAACCTCACCCAAGTAGAGCTTCAGAACAATCTTCTCACGGGACAGTTTCCTGAGGTTGGTTCCGTTGCTCTTAATCTCGGTCAGATTAGTCTCTCTAATAACAAGCTCTCTGGGCCATTGCCACCCACCATTGGAAACTTCACCAGCATGCAGAAGCTTCTTCTCGACGGTAACAAGTTCTCGGGTCAAATCCCTTCGCAGATAGGCAGGCTGCAACAGCTTTCCAAGATTGATTTTAGCCATAATCAGTTTTCGGGTCCCATTGCTCCTGAGATAAGCAAATGCAAGCTTTTGACCTTCATTGACCTCAGCCGCAATGAGCTCTCTGGTGAGATTCCAAACCAGATAACTGCCATGCGGATATTGAATTATCTCAACCTTTCAAGAAACAATTTAGTTGGCTCAATTCCGGGCTCCATAGCTTCTATGCAAAGTTTAACTTCTGTTGATTTTTCCTACAACAATCTCTCTGGTTTGGTTCCTGGAACTGGGCAGTTCGGCTACTTTAACTATACCTCTTTCCTAGGGAACACTGAACTCTGTGGTCCTTACTTGGGTCCTTGCAAAGACGGGGTTGCCAATGGCCCTCGTCAACCTCATGTTAAAGGTCCTCTCTCTTCTTCGTTGAAGCTTCTGTTAGTTATAGGGTTGCTTGTGTGCTCCATCGCATTTGCTGTTGCGGCAATAATCAAAGCTCGGGCTTTGAAAAAGGCCAGTGAAGCTCGTACGTGGAAATTAACTGCATTCCAGCGTTTGGACTTCACTGCTGATGATGTTCTGGACTGTTTGAAGGAGGACAACATAATAGGAAAAGGAGGTGCAGGCATTGTGTACAAAGGTGCAATGCCGAATGGGGATCAGGTTGCTGTGAAAAGGTTACCTGCCATGAGCAGGGGATCTTCGCATGACCATGGTTTCAATGCTGAGATTCAGACTTTGGGGAGGATTCGACATAGACACATTGTTAGACTGTTGGGTTTCTGTTCAAACCACGAGACAAATCTCTTGGTGTATGAGTATATGCCTAATGGAAGTTTGGGTGAGGTTCTTCATGGCAAGAAAGGTGGTCATTTGCACTGGGACACAAGGTATAAGATTGCTGTGGAGGCCGCCAAGGGCCTTTGCTATCTACATCATGACTGTTCGCCACTCATTGTCCATCGAGATGTTAAATCCAACAATATCCTTCTTGATTCCAACTTTGAAGCTCATGTTGCGGACTTTGGGCTCGCTAAGTTCCTTCAAGATTCTGGAACATCTGAATGCATGTCTGCAATTGCCGGTTCCTATGGATACATAGCTCCAGAGTATGCCTACACGTTAAAAGTTGATGAGAAAAGCGACGTGTACAGCTTTGGAGTTGTTCTTTTGGAGCTTGTAACAGGCAGGAAACCGGTTGGGGAGTTTGGTGATGGTGTGGACATTGTGCAATGGGTGAGGAAAATGACGGATTCAAACAAGGAAGGGGTTTTGAAGGTTCTTGATCCTAGACTTCCATCAGTTCCCCTCCATGAGGTGATGCATGTTTTCTATGTAGCCATGCTATGTGTTGAGGAACAGGCGGTGGAGCGACCTACTATGCGAGAAGTTGTTCAAATTCTCACCGAGCTTCCAAAGCCGCCAAGCTCTAAACAGGGGGACTTAACAATCACAGAGTCCTCTCTGTCATCATCTAACAGTTTAGAGTCTCCAACCACAACATCTAAGGAACCTAAAGATGATCAACGTCCTCCTCAGTCTTCACCACCTGATCTTCTTAGCATTTGA 3048 0.501 MRLFLCSIFFFLFHSHTLHAARISEYRALLSFKDSSITDDPTHALSSWNTTTPYCSWFGVTCDSRRHVTTLNLTSLSLSGTLYDDLSHLPFLSYLSLADNQFSGPIPASFSALSALRHLNLSNNAFNTTFPSNLARLVNLQVLDLYNNNMTGPLPLAVAAMPLLRHLHLGGNFFSGQIPPEYGTWQHLQYLAVSGNELTGNIPPELGNLTALRELYIGYYNAYSGGIPPEMGNLSQLVRFDAAYCGLSGEIPADIGRLQNMDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNVLSGEVPANFAELKNLTLLNLFRNKLHGAIPEFVGELPALEVLQLWENNFTGSIPRSLGRNGKLTLVDLSSNKLTGMLPPDMCYGNRLQTLITLGNYLLGPIPDSLGKCESLTRIRMGENFLNGSIPVGLFGLPNLTQVELQNNLLTGQFPEVGSVALNLGQISLSNNKLSGPLPPTIGNFTSMQKLLLDGNKFSGQIPSQIGRLQQLSKIDFSHNQFSGPIAPEISKCKLLTFIDLSRNELSGEIPNQITAMRILNYLNLSRNNLVGSIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFGYFNYTSFLGNTELCGPYLGPCKDGVANGPRQPHVKGPLSSSLKLLLVIGLLVCSIAFAVAAIIKARALKKASEARTWKLTAFQRLDFTADDVLDCLKEDNIIGKGGAGIVYKGAMPNGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPSSKQGDLTITESSLSSSNSLESPTTTSKEPKDDQRPPQSSPPDLLSI 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03993 1015 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 164 956 - -
Viun3g03993 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 19 82 - -
Viun3g03993 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 83 326 - -
Viun3g03993 1015 SMART LRR_typ_2 282 305 IPR003591 -
Viun3g03993 1015 SMART LRR_typ_2 330 354 IPR003591 -
Viun3g03993 1015 SMART LRR_typ_2 474 498 IPR003591 -
Viun3g03993 1015 SMART LRR_typ_2 161 187 IPR003591 -
Viun3g03993 1015 SMART LRR_typ_2 570 593 IPR003591 -
Viun3g03993 1015 SMART LRR_typ_2 113 137 IPR003591 -
Viun3g03993 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 659 767 - -
Viun3g03993 1015 Pfam Protein tyrosine and serine/threonine kinase 692 961 IPR001245 GO:0004672|GO:0006468
Viun3g03993 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 768 978 - -
Viun3g03993 1015 MobiDBLite consensus disorder prediction 965 993 - -
Viun3g03993 1015 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Viun3g03993 1015 SUPERFAMILY RNI-like 71 391 - -
Viun3g03993 1015 Gene3D Phosphorylase Kinase; domain 1 657 767 - -
Viun3g03993 1015 Gene3D Transferase(Phosphotransferase) domain 1 768 980 - -
Viun3g03993 1015 ProSiteProfiles Protein kinase domain profile. 690 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03993 1015 Gene3D Ribonuclease Inhibitor 19 81 IPR032675 -
Viun3g03993 1015 Gene3D Ribonuclease Inhibitor 82 351 IPR032675 -
Viun3g03993 1015 MobiDBLite consensus disorder prediction 965 1015 - -
Viun3g03993 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 334 619 - -
Viun3g03993 1015 Gene3D Ribonuclease Inhibitor 355 619 IPR032675 -
Viun3g03993 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Viun3g03993 1015 SMART serkin_6 690 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03993 1015 Pfam Leucine rich repeat 116 172 IPR001611 GO:0005515
Viun3g03993 1015 SUPERFAMILY L domain-like 300 614 - -
Viun3g03993 1015 SUPERFAMILY Protein kinase-like (PK-like) 686 961 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03993 Viun-Chr3 47446531 47450614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03993 15 991 Receptor kinase-like Gene Family AT5G65700 80.285 0.0 1595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun3g03993 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03993 - - gmx:100499646 1783.46