Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03986 ATGATGGGTCTTCATCAGGATCCCACCGATCAAGGCCTTCAGCTTATTCTCGGATTAGCTTTGACCACATCCACCCCAGACAACACCGTCACTCCGTCACCACCATCCATTTCCAACACCCTTCATCATCTCACCACCACTCACAGGCCAAACCCCTATTCCTCTAAATCCACTTTCATCTCCACAACTAACTCCCAGGCTGAGCCTTCACTCACGTTGGCTCTCTCCCGCCACACTTACCCGGACCAGCTGCTCAAACTCTCCTCTGAGGACCCTCTTGAACAGACTTCACCTCACAGTGCTATCTCCTCCTTCTCCGGTGGAAGTGGAAGGGTCAAGAGGGAGAGGGATCTCAGCTGTGAAGAGGCCGATGCAACAGAGACAGAGAGGGTTTCTTCAAGAGCCAGCGACGAAGAAGAAGACGGCACCACCGCCAGGAAGAAACTCAGGCTTACCAAAGAACAGTCCGCTTTGCTTGAAGAAAGCTTCAAACAACACAGCACCCTCAATCCTAAACAGAAACAAGCTTTGGCCAAGCAGTTAGGTCTTCGGCCTCGACAAGTCGAAGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTAAAAAAGTGTTGTGAAACATTAACAGACGAGAACAGAAGGTTGCAGAAGGAGCTGCAGGAGCTGAAGGCACTGAAACTGGCTCAGCCCCTTTACATGCCTATGTCTGCGGCAACCCTCACCATGTGTCCCTCATGTGAGAGGCTAGGTGGCGGCGTCGGCGGCGGCGCTTCCACTAAGTCACCCTTCTCCATGGCTCCTAAACCTCACTTCTTCAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 879 0.5267 MMGLHQDPTDQGLQLILGLALTTSTPDNTVTPSPPSISNTLHHLTTTHRPNPYSSKSTFISTTNSQAEPSLTLALSRHTYPDQLLKLSSEDPLEQTSPHSAISSFSGGSGRVKRERDLSCEEADATETERVSSRASDEEEDGTTARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMSAATLTMCPSCERLGGGVGGGASTKSPFSMAPKPHFFNPFANPSAAC 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03986 292 MobiDBLite consensus disorder prediction 110 149 - -
Viun3g03986 292 MobiDBLite consensus disorder prediction 90 107 - -
Viun3g03986 292 CDD homeodomain 146 203 IPR001356 GO:0003677
Viun3g03986 292 MobiDBLite consensus disorder prediction 90 149 - -
Viun3g03986 292 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677
Viun3g03986 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 52 267 - -
Viun3g03986 292 Coils Coil 208 238 - -
Viun3g03986 292 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981|GO:0006355
Viun3g03986 292 SUPERFAMILY Homeodomain-like 136 203 IPR009057 -
Viun3g03986 292 Pfam Homeobox associated leucine zipper 202 236 IPR003106 GO:0006355|GO:0043565
Viun3g03986 292 SMART HOX_1 144 206 IPR001356 GO:0003677
Viun3g03986 292 PRINTS Lambda-repressor HTH signature 182 198 IPR000047 GO:0003677
Viun3g03986 292 PRINTS Lambda-repressor HTH signature 173 182 IPR000047 GO:0003677
Viun3g03986 292 SMART halz 202 245 IPR003106 GO:0006355|GO:0043565
Viun3g03986 292 Gene3D - 150 200 - -
Viun3g03986 292 FunFam Homeobox-leucine zipper protein 18 127 207 - -
Viun3g03986 292 Pfam Homeodomain 146 200 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03986 Viun-Chr3 47339842 47341362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03986 2 292 Homeobox Transcription Factor Family AT4G37790 57.895 9.60e-92 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun3g03986 Homeodomain 4.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03986 K09338 - gmx:100807123 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02240 2 30065597 30067291 Viun3g03986 3 47339842 47341362 PCT