Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03978 ATGAAGAGCATGGAAAATGATGACTCTGTTGACCTTAATAATCAAAATAACTGGTTGGGTTTTTCACTCTCTCCTCAAATGAACGTGGGTGTTGCTTCACACCCGCAACCTTCCTCTGCTGCTGATGTGGTTCCTACAAGTTTTTATCACACTGCACCACTTAATAACTACGGCTTCTACTATGGACTTGAAGCTGAAAATGTTGGATTGTATTCAGCTTTGCCTATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGAATGGAAGCTCTGAGCAGGTCACAAACACAAGCAATGGCTACTACATCAACTCCAAAACTGGAGAATTTCTTAGGTGGGGAAGCGATGGGGACCCCTCACTATGAATGTAGTGTCACAGAAACAATTCCTCTGAGCCTAGACAGTGTGTTTTACAACCAATCCTCACGCCGTGACCCAAATAACCAAACTTTCCAAAACCATGTCCAACACATTACCACTCAACAACAACATCACCAAGAGCTTCAGGCCCAACACTTATCATATTACTCTACCTTGAGAAACCATGATATGATGTTAGAAGGGTCGAAGCAAAGTCAAACCTCAGACAGCAATCTTCAGGTTCCAAACATGGGTGATGATGGAGTTCCTTCTCCTGGTCTTAAGAGTTGGGGAGTAAGGAACTTCCAAACTAGCCATGCACAGGACTCAAAGTTGATTGTTCCTGTGGAGGAAAATGGAGGTGAATCAGGGTCCATTGGATCAATGGCTTATGGGGATTTGCAGTCTTTAAGCTTGTCCATGAGTCCTAGCTCACAGTCCAGTTGTGTCACTAGTTCGCACCGCACATCACCTGCTGTCATTGATTCTGTTGCCATGGATACAAAGAAAAGGGGACCTGAAAAGGTTGACCAGAAGCAAATAATTCATAGGAAGTCCATTGACACCTTTGGACAAAGAACCTCTCAATATAGAGGCGTGACAAGACATAGGTGGACTGGTAGGTATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAAGCAGGAAAGGAAGACAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACGAGACAGGAGTATGTTGCTCATTTAAGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGGTGGCAAGCACGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACACAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATAAAATTCCGAGGAGTGAATGCTGTAACCAACTTTGACATAACAAGATATGACGTGGAGAAAATCATGGCAAGCAGCAACCTTCTTAGCAGTGAGCTAGCTAGGCGCAACAGAGAGACAGACAGTGGAACTCAGTATATTGATCATAATCATAAGTCTTCTGCGTATGATGATACTGAAGAAGCTATTCTAATGCAGAAGAGCTGTGAAAGTCAAAATGATCAGTGGAAGATGGCTCTCTATCAATCCTCTCAACAACTTGACCAGAATCCACCTGGAATTGAGAGTGACAGAACTAAGCAATCCTTCTCAGTGGCTTTGGACAACATGTTTCATCAAGAAGTAGAGGAATCAAGTAAGGTGAGAACGCATGTATCAAATCCTTCTTCACTGGCCACAAGTTTGAATAGCTCAAGAGAAGGTAGCCCTGATAAGACAAGCTTGCCAATGCTCTCTGGAATGCCTTCAACTGCGTCAAAACTATTGTCTACCAATCCAAACAACGTGAATTCTTGGGATCCTTCACCCCATTTGAGGCCTGCCCTTTCTTTGCCTCAGATGCCAGTTTTTGCTGCTTGGACAGATGCATAG 1980 0.4379 MKSMENDDSVDLNNQNNWLGFSLSPQMNVGVASHPQPSSAADVVPTSFYHTAPLNNYGFYYGLEAENVGLYSALPIMPLKSDGSLYGMEALSRSQTQAMATTSTPKLENFLGGEAMGTPHYECSVTETIPLSLDSVFYNQSSRRDPNNQTFQNHVQHITTQQQHHQELQAQHLSYYSTLRNHDMMLEGSKQSQTSDSNLQVPNMGDDGVPSPGLKSWGVRNFQTSHAQDSKLIVPVEENGGESGSIGSMAYGDLQSLSLSMSPSSQSSCVTSSHRTSPAVIDSVAMDTKKRGPEKVDQKQIIHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASSNLLSSELARRNRETDSGTQYIDHNHKSSAYDDTEEAILMQKSCESQNDQWKMALYQSSQQLDQNPPGIESDRTKQSFSVALDNMFHQEVEESSKVRTHVSNPSSLATSLNSSREGSPDKTSLPMLSGMPSTASKLLSTNPNNVNSWDPSPHLRPALSLPQMPVFAAWTDA 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03978 659 CDD AP2 417 478 IPR001471 GO:0003700|GO:0006355
Viun3g03978 659 ProSiteProfiles AP2/ERF domain profile. 418 476 IPR001471 GO:0003700|GO:0006355
Viun3g03978 659 Gene3D AP2/ERF domain 418 478 IPR036955 GO:0003700|GO:0006355
Viun3g03978 659 Gene3D AP2/ERF domain 315 384 IPR036955 GO:0003700|GO:0006355
Viun3g03978 659 Coils Coil 383 403 - -
Viun3g03978 659 MobiDBLite consensus disorder prediction 579 637 - -
Viun3g03978 659 CDD AP2 315 382 IPR001471 GO:0003700|GO:0006355
Viun3g03978 659 SMART rav1_2 418 482 IPR001471 GO:0003700|GO:0006355
Viun3g03978 659 SMART rav1_2 316 388 IPR001471 GO:0003700|GO:0006355
Viun3g03978 659 MobiDBLite consensus disorder prediction 189 208 - -
Viun3g03978 659 FunFam AP2-like ethylene-responsive transcription factor 417 478 - -
Viun3g03978 659 FunFam AP2-like ethylene-responsive transcription factor ANT 315 384 - -
Viun3g03978 659 MobiDBLite consensus disorder prediction 585 637 - -
Viun3g03978 659 SUPERFAMILY DNA-binding domain 315 384 IPR016177 GO:0003677
Viun3g03978 659 Pfam AP2 domain 419 468 IPR001471 GO:0003700|GO:0006355
Viun3g03978 659 Pfam AP2 domain 316 374 IPR001471 GO:0003700|GO:0006355
Viun3g03978 659 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 558 - -
Viun3g03978 659 SUPERFAMILY DNA-binding domain 417 477 IPR016177 GO:0003677
Viun3g03978 659 ProSiteProfiles AP2/ERF domain profile. 316 382 IPR001471 GO:0003700|GO:0006355
Viun3g03978 659 PRINTS Ethylene responsive element binding protein signature 317 328 IPR001471 GO:0003700|GO:0006355
Viun3g03978 659 PRINTS Ethylene responsive element binding protein signature 458 478 IPR001471 GO:0003700|GO:0006355
Viun3g03978 659 MobiDBLite consensus disorder prediction 189 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03978 Viun-Chr3 47202630 47206941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03978 399 659 AP2-EREBP Transcription Factor Family AT4G37750 25.490 4.95e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun3g03978 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03978 K09285 - gmx:100787611 1106.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02234 2 29985303 29989075 Viun3g03978 3 47202630 47206941 PCT