Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03977 ATGAAGAGCATGGAAAATGATGACTCTGTTGACCTTAATAATCAAAATAACTGGTTGGGTTTTTCACTCTCTCCTCAAATGAACGTGGGTGTTGCTTCACACCCGCAACCTTCCTCTGCTGCTGATGTGGTTCCTACAAGTTTTTATCACACTGCACCACTTAATAACTACGGCTTCTACTATGGACTTGAAGCTGAAAATGTTGGATTGTATTCAGCTTTGCCTATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGAATGGAAGCTCTGAGCAGGTCACAAACACAAGCAATGGCTACTACATCAACTCCAAAACTGGAGAATTTCTTAGGTGGGGAAGCGATGGGGACCCCTCACTATGAATGTAGTGTCACAGAAACAATTCCTCTGAGCCTAGACAGTGTGTTTTACAACCAATCCTCACGCCGTGACCCAAATAACCAAACTTTCCAAAACCATGTCCAACACATTACCACTCAACAACAACATCACCAAGAGCTTCAGGCCCAACACTTATCATATTACTCTACCTTGAGAAACCATGATATGATGTTAGAAGGGTCGAAGCAAAGTCAAACCTCAGACAGCAATCTTCAGGTTCCAAACATGGGTGATGATGGAGTTCCTTCTCCTGGTCTTAAGAGTTGGGGAGTAAGGAACTTCCAAACTAGCCATGCACAGGACTCAAAGTTGATTGTTCCTGTGGAGGAAAATGGAGGTGAATCAGGGTCCATTGGATCAATGGCTTATGGGGATTTGCAGTCTTTAAGCTTGTCCATGAGTCCTAGCTCACAGTCCAGTTGTGTCACTAGTTCGCACCGCACATCACCTGCTGTCATTGATTCTGTTGCCATGGATACAAAGAAAAGGGGACCTGAAAAGGTTGACCAGAAGCAAATAATTCATAGGAAGTCCATTGACACCTTTGGACAAAGAACCTCTCAATATAGAGGCGTGACAAGACATAGGTGGACTGGTAGGTATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAAGCAGGAAAGGAAGACAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACGAGACAGGAGTATGTTGCTCATTTAAGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGCAGACACCACCAACATGGAAGGTGGCAAGCACGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACACAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATAAAATTCCGAGGAGTGAATGCTGTAACCAACTTTGACATAACAAGATATGACGTGGAGAAAATCATGGCAAGCAGCAACCTTCTTAGCAGTGAGCTAGCTAGGCGCAACAGAGAGACAGACAGTGGAACTCAGTATATTGATCATAATCATAAGTCTTCTGCGTATGATGATACTGAAGAAGCTATTCTAATGCAGAAGAGCTGTGAAAGTCAAAATGATCAGTGGAAGATGGCTCTCTATCAATCCTCTCAACAACTTGACCAGAATCCACCTGGAATTGAGAGTGACAGAACTAAGCAATCCTTCTCAGTGGCTTTGGACAACATGTTTCATCAAGAAGTAGAGGAATCAAGTAAGGTGAGAACGCATGTATCAAATCCTTCTTCACTGGCCACAAGTTTGAATAGCTCAAGAGAAGGTAGCCCTGATAAGACAAGCTTGCCAATGCTCTCTGGAATGCCTTCAACTGCGTCAAAACTATTGTCTACCAATCCAAACAACGTGAATTCTTGGGATCCTTCACCCCATTTGAGGCCTGCCCTTTCTTTGCCTCAGATGCCAGTTTTTGCTGCTTGGACAGATGCATAG 1983 0.4382 MKSMENDDSVDLNNQNNWLGFSLSPQMNVGVASHPQPSSAADVVPTSFYHTAPLNNYGFYYGLEAENVGLYSALPIMPLKSDGSLYGMEALSRSQTQAMATTSTPKLENFLGGEAMGTPHYECSVTETIPLSLDSVFYNQSSRRDPNNQTFQNHVQHITTQQQHHQELQAQHLSYYSTLRNHDMMLEGSKQSQTSDSNLQVPNMGDDGVPSPGLKSWGVRNFQTSHAQDSKLIVPVEENGGESGSIGSMAYGDLQSLSLSMSPSSQSSCVTSSHRTSPAVIDSVAMDTKKRGPEKVDQKQIIHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASSNLLSSELARRNRETDSGTQYIDHNHKSSAYDDTEEAILMQKSCESQNDQWKMALYQSSQQLDQNPPGIESDRTKQSFSVALDNMFHQEVEESSKVRTHVSNPSSLATSLNSSREGSPDKTSLPMLSGMPSTASKLLSTNPNNVNSWDPSPHLRPALSLPQMPVFAAWTDA 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03977 660 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 559 - -
Viun3g03977 660 SUPERFAMILY DNA-binding domain 417 478 IPR016177 GO:0003677
Viun3g03977 660 Coils Coil 383 403 - -
Viun3g03977 660 MobiDBLite consensus disorder prediction 586 638 - -
Viun3g03977 660 CDD AP2 315 382 IPR001471 GO:0003700|GO:0006355
Viun3g03977 660 FunFam AP2-like ethylene-responsive transcription factor 417 479 - -
Viun3g03977 660 MobiDBLite consensus disorder prediction 189 208 - -
Viun3g03977 660 ProSiteProfiles AP2/ERF domain profile. 418 477 IPR001471 GO:0003700|GO:0006355
Viun3g03977 660 MobiDBLite consensus disorder prediction 581 638 - -
Viun3g03977 660 FunFam AP2-like ethylene-responsive transcription factor ANT 315 384 - -
Viun3g03977 660 PRINTS Ethylene responsive element binding protein signature 317 328 IPR001471 GO:0003700|GO:0006355
Viun3g03977 660 PRINTS Ethylene responsive element binding protein signature 459 479 IPR001471 GO:0003700|GO:0006355
Viun3g03977 660 SUPERFAMILY DNA-binding domain 315 384 IPR016177 GO:0003677
Viun3g03977 660 CDD AP2 417 479 IPR001471 GO:0003700|GO:0006355
Viun3g03977 660 ProSiteProfiles AP2/ERF domain profile. 316 382 IPR001471 GO:0003700|GO:0006355
Viun3g03977 660 SMART rav1_2 418 483 IPR001471 GO:0003700|GO:0006355
Viun3g03977 660 SMART rav1_2 316 388 IPR001471 GO:0003700|GO:0006355
Viun3g03977 660 Pfam AP2 domain 316 374 IPR001471 GO:0003700|GO:0006355
Viun3g03977 660 Pfam AP2 domain 419 469 IPR001471 GO:0003700|GO:0006355
Viun3g03977 660 Gene3D AP2/ERF domain 418 479 IPR036955 GO:0003700|GO:0006355
Viun3g03977 660 Gene3D AP2/ERF domain 315 384 IPR036955 GO:0003700|GO:0006355
Viun3g03977 660 MobiDBLite consensus disorder prediction 189 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03977 Viun-Chr3 47202594 47206941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03977 399 660 AP2-EREBP Transcription Factor Family AT4G37750 25.407 1.46e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun3g03977 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03977 K09285 - gmx:100787611 1106.28