Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03963 ATGTCTCTCGAGTCCACAAGCCACCAAACTCCTGACTTGTATTGCAGTGAAGTAACTAGCGAAGTGATTGACTTGGAGGATTCTGATGAGGCTTTGAAGTTGAATTATGTTCTGTGGGGAGACTCCAACAGTGATGAAAGTTGTCTATTGAGCTTATTAGAATCCGAAAATGACCAATTACAGGAACAAACAAAGTCCCCACGACAGATTCCCAAAACATGGCTGATTAATGCTCGAGAAGAAGCCATAAATTGGATCCTAAAGGTGCATGCTTACTACAGTTTTAGACCTGAGACAGCTTATCTTTCTGTAAATTACCTCGATCGTTTCCTCTCGTCACACACCTTGAAGCATGATAAAGCATGGCCTCTGCAGCTGTTATCAGTTGCTTGTCTTTCACTAGCAGCTAAAATGGAAGAAACCAAAGTGCCGCTTCTTTTAGACCTACAAGTGATCGAGTCTAGGTTCCTCTTTAATCCCAAAACAGTTCAAAGGATGGAACTTTTGGTTATGGCCAGTCTCAAGTGGCGTTTGCGCCCTATAACACCTTTTGATTTTGTCCATCTTTTCATTGCGAAGCTTTCATGGTCTGCTTCCACATGGGGTGATTTAAGTTTCACTGTTTCTCGTGTCTCAGATGTTATTATCAGAACATGTCTAGTCATGGATTTCTTGGTGTTTTCACCATCCACAATAGCAGCAGCTGCTCTGTTATGGGTAAACAATCAATGTGTAGAAGACACGAAATCAGATTGTTTCCACAAGAATATAAACATTGAGATGGTGCAGAAATGTTACAAACTAATGAAGCAGAAACAGATAATTCTCCGATCAGAATTTTATTGGCCAAGGAGTATGCAATTATTGCCCCGAAGTCCCACCTGTGTGCTTGATCGTGCAGCTATGCAAGAAAGCTGCGATGATCACAAGCCCTGA 936 0.4167 MSLESTSHQTPDLYCSEVTSEVIDLEDSDEALKLNYVLWGDSNSDESCLLSLLESENDQLQEQTKSPRQIPKTWLINAREEAINWILKVHAYYSFRPETAYLSVNYLDRFLSSHTLKHDKAWPLQLLSVACLSLAAKMEETKVPLLLDLQVIESRFLFNPKTVQRMELLVMASLKWRLRPITPFDFVHLFIAKLSWSASTWGDLSFTVSRVSDVIIRTCLVMDFLVFSPSTIAAAALLWVNNQCVEDTKSDCFHKNINIEMVQKCYKLMKQKQIILRSEFYWPRSMQLLPRSPTCVLDRAAMQESCDDHKP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03963 311 Pfam Cyclin, C-terminal domain 181 271 IPR004367 -
Viun3g03963 311 Gene3D - 62 179 - -
Viun3g03963 311 SUPERFAMILY Cyclin-like 47 178 IPR036915 -
Viun3g03963 311 CDD CYCLIN_AtCycD-like_rpt2 181 269 - -
Viun3g03963 311 CDD CYCLIN_AtCycD-like_rpt1 78 176 - -
Viun3g03963 311 Gene3D - 51 266 - -
Viun3g03963 311 SUPERFAMILY Cyclin-like 162 278 IPR036915 -
Viun3g03963 311 SMART cyclin_7 84 172 IPR013763 -
Viun3g03963 311 Pfam Cyclin, N-terminal domain 53 178 IPR006671 -
Viun3g03963 311 SMART Cyclin_C_2 181 306 IPR004367 -
Viun3g03963 311 Coils Coil 43 63 - -
Viun3g03963 311 PANTHER CYCLINS 51 271 IPR039361 -
Viun3g03963 311 ProSitePatterns Cyclins signature. 79 110 IPR006671 -
Viun3g03963 311 FunFam D6-type cyclin 64 175 - -
Viun3g03963 311 FunFam D6-type cyclin 176 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03963 Viun-Chr3 47025107 47026684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03963 12 274 Core Cell Cycle Gene Families AT1G70210 40.590 6.78e-56 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03963 K18810 - gmx:100799323 471.47