Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03962 ATGTCTCAGGTGCAGACAAATTGGCTTCATTATTCAAAACAATGTGAAGTAACTAGCGAAGTGATTGACTTGGAGGATTCTGATGAGGCTTTGAAGTTGAATTATGTTCTGTGGGGAGACTCCAACAGTGATGAAAGTTGTCTATTGAGCTTATTAGAATCCGAAAATGACCAATTACAGGAACAAACAAAGTCCCCACGACAGATTCCCAAAACATGGCTGATTAATGCTCGAGAAGAAGCCATAAATTGGATCCTAAAGGTGCATGCTTACTACAGTTTTAGACCTGAGACAGCTTATCTTTCTGTAAATTACCTCGATCGTTTCCTCTCGTCACACACCTTGAAGCATGATAAAGCATGGCCTCTGCAGCTGTTATCAGTTGCTTGTCTTTCACTAGCAGCTAAAATGGAAGAAACCAAAGTGCCGCTTCTTTTAGACCTACAAGTGATCGAGTCTAGGTTCCTCTTTAATCCCAAAACAGTTCAAAGGATGGAACTTTTGGTTATGGCCAGTCTCAAGTGGCGTTTGCGCCCTATAACACCTTTTGATTTTGTCCATCTTTTCATTGCGAAGCTTTCATGGTCTGCTTCCACATGGGGTGATTTAAGTTTCACTGTTTCTCGTGTCTCAGATGTTATTATCAGAACATGTCTAGTCATGGATTTCTTGGTGTTTTCACCATCCACAATAGCAGCAGCTGCTCTGTTATGGGTAAACAATCAATGTGTAGAAGACACGAAATCAGATTGTTTCCACAAGAATATAAACATTGAGATGGTGCAGAAATGTTACAAACTAATGAAGCAGAAACAGATAATTCTCCGATCAGAATTTTATTGGCCAAGGAGTATGCAATTATTGCCCCGAAGTCCCACCTGTGTGCTTGATCGTGCAGCTATGCAAGAAAGCTGCGATGATCACAAGCCCTGA 933 0.4105 MSQVQTNWLHYSKQCEVTSEVIDLEDSDEALKLNYVLWGDSNSDESCLLSLLESENDQLQEQTKSPRQIPKTWLINAREEAINWILKVHAYYSFRPETAYLSVNYLDRFLSSHTLKHDKAWPLQLLSVACLSLAAKMEETKVPLLLDLQVIESRFLFNPKTVQRMELLVMASLKWRLRPITPFDFVHLFIAKLSWSASTWGDLSFTVSRVSDVIIRTCLVMDFLVFSPSTIAAAALLWVNNQCVEDTKSDCFHKNINIEMVQKCYKLMKQKQIILRSEFYWPRSMQLLPRSPTCVLDRAAMQESCDDHKP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03962 310 CDD CYCLIN_AtCycD-like_rpt2 180 268 - -
Viun3g03962 310 PANTHER CYCLINS 51 270 IPR039361 -
Viun3g03962 310 CDD CYCLIN_AtCycD-like_rpt1 77 175 - -
Viun3g03962 310 FunFam D6-type cyclin 175 266 - -
Viun3g03962 310 FunFam D6-type cyclin 63 174 - -
Viun3g03962 310 SMART cyclin_7 83 171 IPR013763 -
Viun3g03962 310 SUPERFAMILY Cyclin-like 46 177 IPR036915 -
Viun3g03962 310 Pfam Cyclin, N-terminal domain 52 177 IPR006671 -
Viun3g03962 310 Pfam Cyclin, C-terminal domain 180 270 IPR004367 -
Viun3g03962 310 SMART Cyclin_C_2 180 305 IPR004367 -
Viun3g03962 310 ProSitePatterns Cyclins signature. 78 109 IPR006671 -
Viun3g03962 310 Gene3D - 61 178 - -
Viun3g03962 310 Gene3D - 50 265 - -
Viun3g03962 310 SUPERFAMILY Cyclin-like 161 277 IPR036915 -
Viun3g03962 310 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03962 Viun-Chr3 47024920 47026684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03962 76 273 Core Cell Cycle Gene Families AT1G70210 46.341 7.32e-56 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03962 K18810 - gmx:100799323 452.981