Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03949 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCTGCGTTGAAAGCTGGAGTAGTCAAACATGGGGCAGGAAAATGGCGCACAATACTTACAGATCCTGAATTTAGTGCTATTTTGCGCATGCGTTCAAATGTAGATCTTAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAACTTGCTCTTAAGAGGAGCCTACCCGCCCCCAAAATTGACAATAACCATATGGCCTTAAGTACTGTAGTTCGACATGATGAAGTTCTTGATACTAAGCCTTTAGCAGTTTCTGGTGGACCATTGCAATCTCCTAATTTGAAAGAACAAATATCAAGGTTGGTAGATAATCATATATTGGAGGCCATTGTCAACATGAAGGAGCAAAAGGGTTCTGACAAAGGTGCCATTATTTCTTATATGGAGGAAAAGTATCGGTGCCCGCCAAATATCAGTAAATTACTGTCAACCAAACTGAAGCATATGGTAGCAAGTGGCAAAATAATCAAGGAGAAGCATAAGTATAGAATTGCATCAAGTTCAGCAGTCTCTGAGAAAAGAAGGTTCTCATCATTGGAAGGGAGGTCCAAAGATCCTTCAGAAGCAAATAAGAATGATGATGTCAACATCCTTTCAAAATCACAAATTGATGAAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCAGCTGCAAAAGCCGTGGCAGAGGCAGAGTCTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCCCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTTAAATGCAAAATGCTTCATATTTGA 879 0.4289 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRSLPAPKIDNNHMALSTVVRHDEVLDTKPLAVSGGPLQSPNLKEQISRLVDNHILEAIVNMKEQKGSDKGAIISYMEEKYRCPPNISKLLSTKLKHMVASGKIIKEKHKYRIASSSAVSEKRRFSSLEGRSKDPSEANKNDDVNILSKSQIDEEISKVKGLTAQEAAAAAAKAVAEAESAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03949 292 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Viun3g03949 292 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Viun3g03949 292 SMART h15plus2 104 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun3g03949 292 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Viun3g03949 292 PANTHER SINGLE MYB HISTONE 4 1 288 IPR044597 GO:0003691
Viun3g03949 292 CDD SANT_TRF 6 57 - -
Viun3g03949 292 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun3g03949 292 SUPERFAMILY "Winged helix" DNA-binding domain 124 196 IPR036390 -
Viun3g03949 292 Gene3D - 2 59 - -
Viun3g03949 292 MobiDBLite consensus disorder prediction 196 215 - -
Viun3g03949 292 Coils Coil 240 277 - -
Viun3g03949 292 MobiDBLite consensus disorder prediction 196 212 - -
Viun3g03949 292 Gene3D - 114 196 IPR036388 -
Viun3g03949 292 Pfam linker histone H1 and H5 family 127 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun3g03949 292 SMART sant 4 59 IPR001005 -
Viun3g03949 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Viun3g03949 292 FunFam Telomere repeat-binding factor 1 2 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03949 Viun-Chr3 46921615 46929466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03949 1 289 Single Myb Histone (SMH) Gene Family AT5G67580 55.405 3.32e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun3g03949 Linker_histone 3.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03949 K09422 - gmx:100779583 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02212 2 29891908 29897146 Viun3g03949 3 46921615 46929466 PCT