Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03942 ATGGATACCTTGTTTAGGCTAGTAAGCTTTCAACAGCAACAGCAACACCATCAACCACAACCCGATCCATCCCTCAACTCCACCACCAGCAGAACCTCTAGCAGTTCCAGATCCTCCCGACAAAACTACTACCATTACCCCCACCAAGAAGACGAAGAATGCTTCAACTTTTACATGGATGAAGAAGACCTGTCCTCGTCTTCTTCCAGACACTACTACCCGTACCACAACGTATCCACCACCACCACCGCCGCCACAACCAACACCTTCAGCACCACCACCAACACCGATTACTCCTACTCCTTCTCCCCCACCCCTCCCCTCCCCGACTTCAACTTCCAATTCTCCCCCAACTGGTCCCACAACCTCCTCCTCGAAACCGCACGCGCCTTCGCCGACAACAATAGCACGCGCCTCCACCACCTCCTCTGGATGCTCAACGAACTCAGCTCCCCATACGGCGACACCGATCAAAAGCTCGCCGCCTATTTCCTCCAAGCCATGTTCAGCCGCGTCACCGACGCGGGAGACCGAACCTACCGAACCCTGGCCTCCGCATCGGAGAAAACATGCTCCTTCGAGTCAACGAGGAAGACGGTGTTGAAATTCCAAGAAGTCAGCCCCTGGACAACTTTCGGACACGTGGCGTCCAACGGCGCCATCTTAGAAGCCTTAGAAGGAAACCCCAAATTGCACATACTTGACATCAGCAACACCTATTGCACTCAATGGCCAACCCTTCTAGAGGCATTGGCAACTCGAACCGACGAAACCCCGCACCTCAGGTTAACCACCGTCGTCACCGGGAGGACCGGTAACTCCGTGCAGCGCGTCATGAAGGAAATCGGAACAAGAATGGAGAAGTTCGCGCGACTCATGGGCGTTCCGTTCAAGTTCAACGTCGTTCATCACGCCGGCGATCTCTCCGACCTCAATTTCTCTCAACTCAACCTCAAAGACGACGAGGCCCTGGCCATCAACTGCGTGAACGCGCTGCATTCTGTTTCCCCGGCGGGGAACGGCCGCGACGCGTTTATATCCTCGCTGCAAGGGTTGCAGCCTAGGATCGTGACGGTGGTGGAGGAGGAGGCAGATTTGGACGTGGGAATCGAGGGCTACGACTTCGTGAGGGGTTTCGAGGAGTGTTTAAGGTGGTTTAGGGTTTACTTCGAGGCGCTGGACGAGAGTTTCGCGAAGACGTGCAACGAGAGGCTGATGCTGGAGCGCGCGGCAGGGAGGGCGGTGGTGGACCTGGTGGCGTGTTCGCCAGCGGATTCCCTGGAGCGTCGGGAGACGGCCGCGAGGTGGGGGACGCGGCTGCATGGGGGAGGGCTAAGCGCGGTGCCGTTCAGCGAAGAGGTTTGCGACGACGTTAGGGCGCTGTTGAGGAGGTACAAGGAGGGTTGGTCGATGGTACCGTGCTCCGACACCGGAATATTCCTTTCGTGGAAGGAAACACCGGTGGTGTGGGCCAGTGCATGGAGGCCTTAA 1491 0.5714 MDTLFRLVSFQQQQQHHQPQPDPSLNSTTSRTSSSSRSSRQNYYHYPHQEDEECFNFYMDEEDLSSSSSRHYYPYHNVSTTTTAATTNTFSTTTNTDYSYSFSPTPPLPDFNFQFSPNWSHNLLLETARAFADNNSTRLHHLLWMLNELSSPYGDTDQKLAAYFLQAMFSRVTDAGDRTYRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGNPKLHILDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTGRTGNSVQRVMKEIGTRMEKFARLMGVPFKFNVVHHAGDLSDLNFSQLNLKDDEALAINCVNALHSVSPAGNGRDAFISSLQGLQPRIVTVVEEEADLDVGIEGYDFVRGFEECLRWFRVYFEALDESFAKTCNERLMLERAAGRAVVDLVACSPADSLERRETAARWGTRLHGGGLSAVPFSEEVCDDVRALLRRYKEGWSMVPCSDTGIFLSWKETPVVWASAWRP 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03942 496 ProSiteProfiles GRAS family profile. 111 495 IPR005202 -
Viun3g03942 496 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 91 485 IPR005202 -
Viun3g03942 496 MobiDBLite consensus disorder prediction 8 43 - -
Viun3g03942 496 Pfam GRAS domain family 122 495 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03942 Viun-Chr3 46892353 46894405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03942 1 496 GRAS Transcription Factor Family AT4G37650 59.328 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun3g03942 GRAS 1.2e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03942 - - gmx:100778524 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03942 3 46892353 46894405 Viun3g03942 3 46892353 46894405 ECH
Viun2g02207 2 29869341 29871794 Viun3g03942 3 46892353 46894405 PCT