Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03921 ATGAGTTGCAACGGCTGCCGAGTCCTTCGAAAGGGATGTAGCGAATCCTGCGTGTTGCGTCCTTCTTTGCAGTGGATCGAAACCGCCGAAGCTCAAGGCCATGCCACCGTCTTCGTTGCCAAATTCTTTGGCCGCGCTGACCTCATGTCCTTCATTTCCAACGTTCCAGAAAATCAGAGACCTGCCCTGTTTCAGTCCTTGCTGTTCGAAGCTTGCGGGAGAACGGTTAACCCCGTCAACGGTGCTGTGGGCCTTCTCTGGACCGGAAACTGGCACGTCTGTCAGGCGGCCGTCGAGACCGTGCTCCGCGGGGGTACGCTCAGGCCCATGCCGGAGCTCATGGGCCTCGCCTCTCCCGCTGCCGCCGCCGACGAGACATCGGAGGTTGCATGCTCCGACATTTGGAGAATCCGAGACCCGAACCCGACTTGTGGCTTCACGAACACCAGATCCCATAACAGAGTCTCCTCCGCCAGCAAACGCAAGCGGTTGGAGGAGCCGGCGAAGCTTCAGGCGGCGCCGAATCTCGATCTCCGACTGACGCCTATTTTCCTGCAGAAGAAGGTTGAAAACCGACGGCCGGTATCGCCGTCGATGACCTCCGAGGAGTCAGGCACGACGACGGCGTGCTTGGAGAGCAAATTCGGGGATCAGTGGGGTCATAGTGGAGACCGGAAAGTTCTCAACCTTTTCATTTGA 699 0.5851 MSCNGCRVLRKGCSESCVLRPSLQWIETAEAQGHATVFVAKFFGRADLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELMGLASPAAAADETSEVACSDIWRIRDPNPTCGFTNTRSHNRVSSASKRKRLEEPAKLQAAPNLDLRLTPIFLQKKVENRRPVSPSMTSEESGTTTACLESKFGDQWGHSGDRKVLNLFI 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03921 232 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Viun3g03921 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 215 - -
Viun3g03921 232 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03921 Viun-Chr3 46709487 46710843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03921 1 232 AS2 family AT4G37540 58.130 3.17e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun3g03921 LOB 3.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03921 - - gmx:100816480 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02192 2 29741985 29743613 Viun3g03921 3 46709487 46710843 ECH
Viun3g03921 3 46709487 46710843 Viun3g03921 3 46709487 46710843 ECH
Viun3g03921 3 46709487 46710843 Viun2g02192 2 29741985 29743613 PCT