Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03920 ATGACGCAATTCACACCCTTCCACCAAATCACACCCCTCCCCAACCCTACCATCATGAACAAAAACCAAATCCCTAGAACTAGGCCCTGGCCTGCAGGCTTCCCTACCTCCAAGGCCTTAACCAACTTCGCCGACGCTAACTGCATGGAACAGTTACTTCTTCACTGTGCCAACGCTATTCAAACCAACGACGTAACCCTCGCCCAGCAAATCCTTTGGGTCCTCAACAACATAGCATCCCCCGACGGCGACTCCAACCAACGCCTTGCCTCCAGCTTCCTCCGCGCCCTCACCGTACGTGCCGGCCAAACCGGCACCTGCAAGATGCTCGTCGAGGTAACCGATCACGACCGCACCAACCTCTCCCTAGACACCCACAAATTCTCCGTCATCGAGCTTGCCAACTTCGTCGACCTAACCCCCTGGCACCGCTTCGGCTTCACCGCCGCCAACGCCGCCATCCTAGAAGCCACCGATGGCTTCTCCGTCATCCACATCGTCGACCTCAGTCTCACGCATTGCATGCAGATTCCCACGCTCATCGACGCCATCGCCAGCCGCCACGAGGTCCCTCCTCTCATCAAACTCACTGTCGCCGCCGATGCCTCCCGCAGAGACATCCCTCCTATGCTCGACCACTCCTACGAAGAACTCGGCGCCAAGTTGGTCAATTTCGCAAGGTCCAGAAACGTCGTCATGGAGTTCAGAGTGGTTTCTTCCACTTACCAAGACGGTTTCGCGGGTTTGATCGAACAGTTAAGAGTGCAACAACAGCATTTTGTTTACGCAGTTGAACCTCGTCCCTCTGAGGCTTTGGTTATCAACTGTCACATGATGCTTCACTACATACCCGACGAAACCCTACACGCTATCCCCGAAACAGACTTAACCTCTTTGCTCTACGATTCTTCTTCTTCTTCTGCTGGTTCTTCTTCTTCTGCAGCAGTTAGCGTTACTCCCACTTCCTCTCTGCGATCGTTGTTCCTTAAGTCCCTGCGGGGTTTAGATCCAACACTTGTAATCTTGGTTGATGAAGATGCGGATTTGACATCCAATAACTTGGTTTGCAGGCTAAGATCTGCGTTTAACTATCTATGGATACCTTACGACACTGTGGACACGTTCCTTCCACGAGGGAGCAAGCAAAGGCAGTGGTACGAAGCAGACATTTCCTGGAAGATTGAGAACGTGATAGCGCAGGAAGGGGTTCAGAGGGTGGAGAGGGTTGAGCCAAAGAACAGGTGGGAGCAGCGAATGAAGAACGTAAACTTTCAAGCGGTGACTTTCAGTGAGGACTCTGTTGCGGAGGTGAAGGGGATGCTCGATGAACATGCTGCGGGGTGGGGATTGAAGAGGGAAGATGAACACATTGTCCTCACTTGGAAAGGACACAACGTGGTGTTTGCCTCTGCTTGGTTACCTGCTTGA 1428 0.5287 MTQFTPFHQITPLPNPTIMNKNQIPRTRPWPAGFPTSKALTNFADANCMEQLLLHCANAIQTNDVTLAQQILWVLNNIASPDGDSNQRLASSFLRALTVRAGQTGTCKMLVEVTDHDRTNLSLDTHKFSVIELANFVDLTPWHRFGFTAANAAILEATDGFSVIHIVDLSLTHCMQIPTLIDAIASRHEVPPLIKLTVAADASRRDIPPMLDHSYEELGAKLVNFARSRNVVMEFRVVSSTYQDGFAGLIEQLRVQQQHFVYAVEPRPSEALVINCHMMLHYIPDETLHAIPETDLTSLLYDSSSSSAGSSSSAAVSVTPTSSLRSLFLKSLRGLDPTLVILVDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADISWKIENVIAQEGVQRVERVEPKNRWEQRMKNVNFQAVTFSEDSVAEVKGMLDEHAAGWGLKREDEHIVLTWKGHNVVFASAWLPA 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03920 475 MobiDBLite consensus disorder prediction 11 31 - -
Viun3g03920 475 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 48 462 IPR005202 -
Viun3g03920 475 Pfam GRAS domain family 49 472 IPR005202 -
Viun3g03920 475 ProSiteProfiles GRAS family profile. 40 473 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03920 Viun-Chr3 46668001 46670110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03920 31 474 GRAS Transcription Factor Family AT3G49950 56.250 1.30e-173 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun3g03920 GRAS 7.3e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03920 - - gmx:100814364 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03920 3 46668001 46670110 Viun3g03920 3 46668001 46670110 ECH