Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03890 ATGTCTGGGAACCCGGAAGAGGAGACACTGTTGCCGAACTCCTTTCAGGAAGAAGAGGAGCAGCAAGAAACAGCCTACGAATCTTCGGAGAAGATCGTGGTGGTGGGAATCGACGAGTCCGATAACGAGGACAATTGGGGGAGAGTGCCTCCTTTCTCCTGGAAGAAGCTATGGCTCTTTACTGGGCCGGGCTTTCTCATGAGCATAGCGTTTCTGGACCCGGGCAACCTCGAGGGGGACCTTCAGGCCGGAGCTATCGCCGGCTACTCTCTGCTGTGGCTTTTGATGTGGGCCACGGCCATGGGCCTCTTGATCCAGCTCCTCTCCGCCCGTCTCGGCGTCGCCACCGGGAAGCACCTCGCTGAACTCTGCAGGGAGGAATACCCTGCGTGGGCCCGGATAGTGCTTTGGATCATGGCCGAACTCGCTCTCATTGGCTCCGATATTCAGGAGGTTATTGGAAGCGCTATTGCCATCAGGATCCTCAGTCGTGGGGTTGTGCCCCTCTGGGCAGGGGTCGTCATCACTGCTCTTGATTGTTTTATTTTTCTCTTTCTAGAGAACTATGGTGTGAGGACACTGGAAGCTTTTTTTGCTGTTCTCATTGGTGTGATGGCAATCTCGTTTGCGTGGATGTTTGGTGAAGCAAAGCCCAGTGGCAAGGAACTGCTTCTTGGTGTTTTGATTCCAAAACTCAGCTCCAGAACTATACAACAGGCTGTTGGAGTTGTGGGGTGCCTTATTATGCCGCACAATGTGTTCTTGCACTCTGCTCTTGTTCAGTCAAGGCAGGTTGACCGCAGCAAGAAAGGCCGGGTTCAAGAAGCTCTTAATTATTACTCTATAGAGTCCACCCTTGCCCTTGTTGTCTCCTTTATCATAAATATATTTGTCACAGCAGTGTTTGCTAAGGGGTTTTATGGTTCTGAACTTGCAAACAGCATTGGTCTTGTAAATGCAGGACAGTATCTTGAGGAGACATATGGGGGTGGACTGTTTCCAATTTTATACATATGGGGTATTGGGTTATTAGCAGCAGGTCAAAGTAGCACTATTACTGGTACTTATGCTGGACAATTCATCATGGGAGGTTTTCTAAATTTAAGATTAAAGAAGTGGATGAGGGCGTTGATTACCCGAAGTTGTGCAATAATCCCAACAATGATAGTTGCTCTTTTATTTGACACCTCAGAGGGATCGTTAGATATTCTGAATGAGTGGCTCAATGTCCTTCAGTCAGTTCAAATCCCCTTTGCACTTATTCCCTTGCTTTATCTGGTGTCAAAGGAGCAGATAATGGGCACTTTCAGAATTGGCTCTGTTCTCAAGATTACATCATGGCTTGTGGCTGCTCTGGTGATAGTGATTAACGGGTATCTTTTGACGGAATTCTTTTCCTCCGAAGTTAATGGTCCCTTGTTTGGGGCTGTAGTGGGTGCAATAACTGCTGCATATGTTGCATTCTTACTATACCTTATCTGGAGAGCCGTTGCGTTTTACCTTGGCAAAGCATAA 1515 0.4792 MSGNPEEETLLPNSFQEEEEQQETAYESSEKIVVVGIDESDNEDNWGRVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPAWARIVLWIMAELALIGSDIQEVIGSAIAIRILSRGVVPLWAGVVITALDCFIFLFLENYGVRTLEAFFAVLIGVMAISFAWMFGEAKPSGKELLLGVLIPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDRSKKGRVQEALNYYSIESTLALVVSFIINIFVTAVFAKGFYGSELANSIGLVNAGQYLEETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIIPTMIVALLFDTSEGSLDILNEWLNVLQSVQIPFALIPLLYLVSKEQIMGTFRIGSVLKITSWLVAALVIVINGYLLTEFFSSEVNGPLFGAVVGAITAAYVAFLLYLIWRAVAFYLGKA 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03890 504 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun3g03890 504 PRINTS Natural resistance-associated macrophage protein signature 409 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun3g03890 504 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun3g03890 504 PRINTS Natural resistance-associated macrophage protein signature 240 263 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun3g03890 504 PRINTS Natural resistance-associated macrophage protein signature 166 185 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun3g03890 504 PRINTS Natural resistance-associated macrophage protein signature 136 162 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun3g03890 504 PRINTS Natural resistance-associated macrophage protein signature 191 212 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun3g03890 504 NCBIfam Nramp family divalent metal transporter 62 431 - -
Viun3g03890 504 Pfam Natural resistance-associated macrophage protein 78 439 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun3g03890 504 MobiDBLite consensus disorder prediction 1 29 - -
Viun3g03890 504 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 55 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun3g03890 504 Hamap Divalent metal cation transporter MntH [mntH]. 43 465 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun3g03890 504 MobiDBLite consensus disorder prediction 1 19 - -
Viun3g03890 504 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 41 494 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03890 Viun-Chr3 46385476 46389428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03890 19 493 Inorganic Solute Cotransporters AT1G47240 77.263 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03890 K21398 - gmx:100812381 914.835