Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03889 ATGACCTTCCTCACGGAGGATCCTCATCATGACCATCATCATGATCATGACCACCCTGAAGATGGTAACATAGGAGAATGGCTGTGTTTAGGCCTGAAAGGAGACGTTCCGGTGGAGGCAGAAGAAGAAGAAAAGTCGTCGAAGGGTCACCACCAGAGCAAGGTATTCTCATGCAACTTCTGCATGAGAAAGTTTTACAGTTCACAAGCCTTAGGGGGTCACCAGAATGCACACAAGAGGGAGAGAGAAGCAGCAAGAAGCTACCACCAGTCTCATAGGATGATGATGACAGCAAGATCACCAATGGGGTTCGCTTACACCTCTCTGGCATCTAGGTCACTGGGAATACAGCCTCACTCTCTTGTGCACAAACCAGGCAGAGAAAGGTCTGCTATGGTGGGTAGATTCAGTACTGATGCCACCGTTAATGGCGCTGGTGTGGCATCGTGGACACCCTTTTTGCTTGAACAGGCCATGGATTTCTATTGGCCGGGTAGCTTTCGGGTGGACTTGCCAAAACAAGAATCAGATGTTAATAAGATTGACTTAGATCTTCGCCTCTGA 564 0.4858 MTFLTEDPHHDHHHDHDHPEDGNIGEWLCLGLKGDVPVEAEEEEKSSKGHHQSKVFSCNFCMRKFYSSQALGGHQNAHKREREAARSYHQSHRMMMTARSPMGFAYTSLASRSLGIQPHSLVHKPGRERSAMVGRFSTDATVNGAGVASWTPFLLEQAMDFYWPGSFRVDLPKQESDVNKIDLDLRL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03889 187 MobiDBLite consensus disorder prediction 1 20 - -
Viun3g03889 187 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Viun3g03889 187 PANTHER ZINC FINGER PROTEIN 4-LIKE 12 187 - -
Viun3g03889 187 SUPERFAMILY beta-beta-alpha zinc fingers 53 83 IPR036236 -
Viun3g03889 187 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Viun3g03889 187 Gene3D Classic Zinc Finger 39 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03889 Viun-Chr3 46348811 46349866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03889 42 178 C2H2 Transcription Factor Family AT1G24625 41.135 3.79e-23 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03889 - - ccaj:109809498 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03889 3 46348811 46349866 Viun3g03889 3 46348811 46349866 ECH