LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g03884	ATGGCGACTGTTCAGCTCCACACAATTCAACACTGCTTCTGCGTGGCACTTCTTTTCCTTCTTCAGCTCTCATCACTGCAGTTCGCCTCACTCGGCTACAACGTCCCAGATAAGTACTTCATCAATTGTGGTTCAGACAACAGTGTTACCGAAAGTGGCAAGCTTTACGTTGGTGAATCAACCCCTGAAGCCGGTTTTAGCAGCAGTAACACAGAAAGGAACCAGTCATCGGTGCCTTCTCCTCTTTACCAAACAGCAAGGATTTTTCGAAGGGAATCTTGGTATAAGTTCAACATCGATACAAATGGCACCTACCTGGTACGCCTCCATTTCTTCCCTTTCACTTCCCCGAGTAATCTTTCCTCCGCCAGATTCAACGTTTCAGTTCCTGGATTCTGGTTGTTGCAAAACACTAATGGTAGAAATGATAGCAATAACAACTCTGCTTTAGTAAAAGAGTTTTTCATGGAAATCAGTACCCCCAGTATTAAAATAACTTTCAGACCTCTGGAATCATCGTTTGCGTTTGTGAATGCCATAGAACTGTTCGTACTACCCCTCCATCTCATATCCGACAACAACGTGAGGCGTTTCACTCCTACTAGGGGTACATCTTCATACAGCGGAGGTTTGTACTCTCGGGTGTTGGAGACCAAACACAGGCTTAATGTTGGTGGCCAGACAATGAAAGATATCTTATTGAGAAACTGGATTCCAGATGATATATATCTCATTTATCCGGAAAACGCCAAGAATCGTTCCCCTTACCAGGGTCAGATCGTGCCCCGTGTAGGTGATGACTCCGATGGTCCAAACGCAGCTAGTTATACTGCGCCATCTGATGTGTACGGAACTGCTAAGGAGACTAAAAACATCTCTACCAGTGCCATAGACTTTGGACTTTTCAACATAACATGGGCTCTTCCGGTGGACAACAACACAGATCATCTCCTTCGGCTTCACTTCTGTGATTATGTCAGTTCAGACGTTGGCCTTACACTGTTCGAACTTTCCATTTATGACGCCCATGTCAAGCAGCTAAATAATGACCCAAAAGTGTCTAACGAGTTGCCTGCCCCTTATTATTATGATTTCGTGTTGAACTCTGATAACTCTGGACATATTAAGGTCAGTCTAACACCTAATGAAACCGCTGACATAAAGGATGCATTTTTAAACGGGCTAGAAATAATGAAATTGATTGAATCATCAAATTCTGTTCCCCCTGACTTGGACTCCGAGTATAATCGTCTTCCTGTGTTACTGGGTTCAGTTCTCGGTGGTGTAGTCTTGGTTTCTGTTGTGGTGGTACTTGGCTTTCTTTGGCGTTTTAAAATGAACAAGGAAAAGTCCAATGAGAATTCCCACAGGTTGCCAATTCTGGATAATGGTGGACGGAGTTCTCACGGCAGATTGACTGATACAACCAATCGCGGCTCTCCCCTTCCCAACCTAAACCTAGAGCTCAAAATTCCATTGGTTGATCTTCAACTGGCAACAAAGAACTTCCACGCAAGCCAGCTAATTGGCAAGGGAGGTTTTGGCAACGTCTACAAGGGAGTCCTCGAGAATGGCATGACAGTGGCTGTGAAAAGAAGCCAGCCAGGGTCAGGTCAAGGCCTTCCAGAATTTCAGACAGAGATCATGGTTTTGTCTAAGATTCGCCACAAGCACCTTGTTTCCTTAATTGGGTATTGTGATGAGAAGTTCGAGATGATTCTGGTGTATGAATACATGGAAAAAGGGACACTCAGGGACCATTTGTATAATACAAAGTTGCCAAGCTTGTCCTGGAAGGTGAGGCTTCAAATCTGCATTGATTCTGCCAGGGGTCTCCATTATCTTCACAAAGGAGCAGCTGGGGGAATCATTCACCGTGATGTAAAGTCCACAAACATATTGCTTGATGAGAACCATGTTGCTAAAGTTGCTGATTTTGGTCTTTCAAGGTCAGGTCCTCCTGATACTCAACCTCATGTCACCACTGGTGTTAAAGGCACTTTTGGGTATCTTGATCCTGAGTATTTCAGGTCGCAACAGCTGACAGAAAAATCTGATGTCTACTCATTTGGCGTAGTTCTTTTGGAAGTTTTGTGTGCAAGAGCAGCGATTGACCCATCTCTTCCAACAGATCAGATAAACTTGGCGGAATGGGGATTGCTTTGCAAAAGCAAGGGCACACTCCAAGAGATCATCGATCCTTCCATCACGGAGCAAATTGATCAGAACTCACTCAGAAGATTTAGTGAGACGATAGAAAAATGCTTGCAAGAAGATGGTTGTGATAGGCCAACCATGGGCGATGTGTTGTGGGACTTGGAGTATGCGCTGCAGCTTCAGAAAGGTGCAAATGCAATACAGAGAGAACCGTATGAGGATAGTTCTAGTAATGTTTCTGCATCACTTCAACTGCCCAATGTTCGGCGTCTTCCTTCACTCTCGACACTGAGTGAAGCGGATGACACCATTGTGAGGGGTGAGGAATCCGATAGTGTTGTGGATTCCGTTTTCTCCCAGTTGAAGATTGATGATGCCAGATAG	2541	0.4467	MATVQLHTIQHCFCVALLFLLQLSSLQFASLGYNVPDKYFINCGSDNSVTESGKLYVGESTPEAGFSSSNTERNQSSVPSPLYQTARIFRRESWYKFNIDTNGTYLVRLHFFPFTSPSNLSSARFNVSVPGFWLLQNTNGRNDSNNNSALVKEFFMEISTPSIKITFRPLESSFAFVNAIELFVLPLHLISDNNVRRFTPTRGTSSYSGGLYSRVLETKHRLNVGGQTMKDILLRNWIPDDIYLIYPENAKNRSPYQGQIVPRVGDDSDGPNAASYTAPSDVYGTAKETKNISTSAIDFGLFNITWALPVDNNTDHLLRLHFCDYVSSDVGLTLFELSIYDAHVKQLNNDPKVSNELPAPYYYDFVLNSDNSGHIKVSLTPNETADIKDAFLNGLEIMKLIESSNSVPPDLDSEYNRLPVLLGSVLGGVVLVSVVVVLGFLWRFKMNKEKSNENSHRLPILDNGGRSSHGRLTDTTNRGSPLPNLNLELKIPLVDLQLATKNFHASQLIGKGGFGNVYKGVLENGMTVAVKRSQPGSGQGLPEFQTEIMVLSKIRHKHLVSLIGYCDEKFEMILVYEYMEKGTLRDHLYNTKLPSLSWKVRLQICIDSARGLHYLHKGAAGGIIHRDVKSTNILLDENHVAKVADFGLSRSGPPDTQPHVTTGVKGTFGYLDPEYFRSQQLTEKSDVYSFGVVLLEVLCARAAIDPSLPTDQINLAEWGLLCKSKGTLQEIIDPSITEQIDQNSLRRFSETIEKCLQEDGCDRPTMGDVLWDLEYALQLQKGANAIQREPYEDSSSNVSASLQLPNVRRLPSLSTLSEADDTIVRGEESDSVVDSVFSQLKIDDAR	846

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g03884	846	ProSitePatterns	Protein kinases ATP-binding region signature.	509	531	IPR017441	GO:0005524
	Viun3g03884	846	ProSiteProfiles	Protein kinase domain profile.	503	776	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g03884	846	CDD	STKc_IRAK	509	774	-	-
	Viun3g03884	846	FunFam	Putative receptor-like protein kinase	38	186	-	-
	Viun3g03884	846	SUPERFAMILY	Protein kinase-like (PK-like)	480	774	IPR011009	-
	Viun3g03884	846	FunFam	receptor-like protein kinase FERONIA	468	578	-	-
	Viun3g03884	846	PANTHER	OS07G0166700 PROTEIN	490	780	IPR045272	GO:0004714\|GO:0006468
	Viun3g03884	846	Pfam	Malectin-like domain	41	399	IPR024788	-
	Viun3g03884	846	Gene3D	-	216	401	-	-
	Viun3g03884	846	Gene3D	-	38	184	-	-
	Viun3g03884	846	Gene3D	Phosphorylase Kinase; domain 1	472	578	-	-
	Viun3g03884	846	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	623	635	IPR008271	GO:0004672\|GO:0006468
	Viun3g03884	846	SMART	serkin_6	503	776	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g03884	846	FunFam	Putative receptor-like protein kinase	214	401	-	-
	Viun3g03884	846	FunFam	Receptor-like protein kinase FERONIA	579	796	-	-
	Viun3g03884	846	Gene3D	Transferase(Phosphotransferase) domain 1	579	798	-	-
	Viun3g03884	846	Pfam	Protein tyrosine and serine/threonine kinase	505	770	IPR001245	GO:0004672\|GO:0006468
	Viun3g03884	846	MobiDBLite	consensus disorder prediction	455	479	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g03884	Viun-Chr3	46281743	46284617	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g03884	14	846	Receptor kinase-like Gene Family	AT2G23200	43.843	0.0	602

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Viun3g03884		Malectin_like	1.2e-25	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g03884	-		-	gmx:100789555	1133.63