Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03878 ATGGAAACGCTTCCTTACTCGATCCCCTCCACCAAATTGCACTCCCTTCATTTTTACACCGGTGCTTCACGAATTCGATCCTCCAGGCTCCCTTTTCGCCCTCCCCGATTTTCAATCAAACCTTTATATTCCCCCAAATTTTTCATTCTCCCTCGTCACAGCCTTCGCTGCGTCGCTGAATCCTCCGACAATCACCATCACAGCCACCACCACGACCATCACGGTCACCACCACGACCATCACCACCATCACGACCATCACGAACATCAAGGTCACCACCACCACCACCACCACCATCATCATCACCACTCGCACGGCATCGATGTTGCTAATCTCACTGGGCCCCAAAAGGCGGTTATCGCATTCGCCAAAGCCACCAGATGGACGGACCTGGCAGATATCCTGAGAGAGCACTTGCATCTGTGCTGTTTCTCCACCGCTTTATTTGTGGCTGCTGCCATTTGCCCTCATACCTTGCCCAAGCCACTCGTCAGGCCTTTTCAAAACTCTCTCATTTTCATCGCATTCCCTTTGGTTGGGGTTTCTGCATCACTTGATGCTCTTATTGAGATCAGTAGTGGAAAAGTGAACATCCATGTGTTGATGGCAATGGCGGCCTTTGCGTCAATATTTATGGGAAACTCTTTGGAAGGAGGATTGCTTCTTGCCATGTTTAATCTGGCGCATATAGCCGAAGAGTATTTTACCAGCCGATCTATGGTTGATGTCAGAGAGTTGAAAGAAAATAATCCAGATTTTGCCCTTGTTCTGGATACCAAGGATGATAAACTCCCCAATACATTTGACTTGGCATACAAGAGGATTCCCGTGCATGATGTAACTGTAGGATCATATATTCTGGTTGGTGCCGGCGAGTCTGTACCAGTAGATTGTGAAGTATTCCAAGGCAGTGCCACAATTACCATCGAGCACTTGACAGGGGAAGTGAAACCTTTGGAAGCCAAAGTTGGAGATAGAATTCCCGGCGGTGCAAGGAACTTAGATGGGAGGATAATTGTGAAGGTAACAAAAACTTGGAAGGAATCGACTCTCAGCAAAATTGTTCAGTTGACTGAAGAAGCACAGTCAAATAAACCTAAACTTCAAAGGTGGCTGGATGAATTTGGTGAACGATATAGCCAAGTTGTTGTGGTGCTATCCGTTGCAATTGCTGTTATTGGACCACTTTTATTTAAGTGGCCGTTCATTGGTACATCTGCTTGCAGAGGTTCAATTTACAGAGCGTTAGGGCTTATGGTGGCAGCATCACCTTGTGCCTTGGCTGTGGCTCCATTGGCGTATGCTATAGCAATCAGTTCTTGTGCCAAGAAGGGAATACTACTCAAAGGTGGACATGTTCTCGATGCTCTAGCTTCTTGTCATACTATTGCATTTGACAAAACAGGGACGTTGACAACTGGTGGACTTGTATTCAAGGCAATTGAACCGATTTATGGTCATCATGTTAGAAACAATGAATCAAAATTTTCTTCCTGTTGCATTCCCACCTGTGAAAAAGAAGCTCTTGCGGTTGCTGCAGCTATGGAAAAGGGTACTACACATCCTATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTATTTCCGTAGAAAGTTTTGAATACTTTCCTGGCAGAGGCCTTACTGCTACTGTTAACAACATTGAGTCAGGAATTGAAGGTGCCAAACTATTAAAAGCATCACTTGGGTCTGTAGATTTCATCACTTCATTTTGTCAATCTGAAGATGAGTCAGAAAAGATCAAGGAAGCGGTTAATACATCTTCTTATGGAAGTGAATATGTTCATGCTGCCCTTTCAGTTAATCAGAAGGTAACATTGATTCATTTAGAGGATAGGCCGCGTCCTGGTGTTTCTAATGTTATTCAAGAATTGCAAGATGAAGCACAGTTTCGTGTGATGATGTTAACCGGAGATCATGAGTCTAGTGCTAGGAGAGTTGCAAGTGCTGTGGGCATCAATGAGTTTCATTGCAACCTGAAGCCTGAAGATAAGCTGAGTCATGTGAAGGATACCTCAAGAGATATGGGGGGAGGCCTAATTATGGTGGGTGAAGGCATCAATGATGCCCCAGCACTAGCTGCAGCAACTGTTGGGATAGTTCTTGCTCACCGTGCGAGTGCAACAGCCATAGCTGTTGCAGATGTATTGTTGCTTAGAGAAAACATTTCTGCAGTGCCATTTTGTATTGCCAAGTCTCGGCAGACAACTTCACTGATTAAACAAAATGTAGCTCTGGCATTGACGTCCATAGTTATAGCTTCCCTTCCATCAGTTTTGGGATTTCTGCCACTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCTTGCTTGTGTGTCTCAATTCCGTACGTGCTCTGAATGAGCCATCTTGGTCCTGGAAGCATGATATCTTACATTTGATTAGCCAGATTAAATCTAGTCTTCTGTCTATCACAGGCTCAAACAGTACCATAACGGCGAATTTGTAA 2505 0.4487 METLPYSIPSTKLHSLHFYTGASRIRSSRLPFRPPRFSIKPLYSPKFFILPRHSLRCVAESSDNHHHSHHHDHHGHHHDHHHHHDHHEHQGHHHHHHHHHHHHSHGIDVANLTGPQKAVIAFAKATRWTDLADILREHLHLCCFSTALFVAAAICPHTLPKPLVRPFQNSLIFIAFPLVGVSASLDALIEISSGKVNIHVLMAMAAFASIFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMVDVRELKENNPDFALVLDTKDDKLPNTFDLAYKRIPVHDVTVGSYILVGAGESVPVDCEVFQGSATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRIIVKVTKTWKESTLSKIVQLTEEAQSNKPKLQRWLDEFGERYSQVVVVLSVAIAVIGPLLFKWPFIGTSACRGSIYRALGLMVAASPCALAVAPLAYAIAISSCAKKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLVFKAIEPIYGHHVRNNESKFSSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSISVESFEYFPGRGLTATVNNIESGIEGAKLLKASLGSVDFITSFCQSEDESEKIKEAVNTSSYGSEYVHAALSVNQKVTLIHLEDRPRPGVSNVIQELQDEAQFRVMMLTGDHESSARRVASAVGINEFHCNLKPEDKLSHVKDTSRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALTSIVIASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNEPSWSWKHDILHLISQIKSSLLSITGSNSTITANL 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03878 834 Pfam haloacid dehalogenase-like hydrolase 462 707 - -
Viun3g03878 834 PRINTS P-type cation-transporting ATPase superfamily signature 108 122 - -
Viun3g03878 834 PRINTS P-type cation-transporting ATPase superfamily signature 617 628 - -
Viun3g03878 834 PRINTS P-type cation-transporting ATPase superfamily signature 718 730 - -
Viun3g03878 834 PRINTS P-type cation-transporting ATPase superfamily signature 640 650 - -
Viun3g03878 834 PRINTS P-type cation-transporting ATPase superfamily signature 694 713 - -
Viun3g03878 834 SUPERFAMILY Calcium ATPase, transduction domain A 272 357 IPR008250 -
Viun3g03878 834 ProSitePatterns E1-E2 ATPases phosphorylation site. 466 472 IPR018303 -
Viun3g03878 834 MobiDBLite consensus disorder prediction 68 105 - -
Viun3g03878 834 NCBIfam heavy metal translocating P-type ATPase 198 796 IPR027256 GO:0006812|GO:0016020|GO:0019829
Viun3g03878 834 Gene3D - 236 362 - -
Viun3g03878 834 SFLD C1.7: P-type atpase like 446 747 - -
Viun3g03878 834 Gene3D - 457 745 IPR023214 -
Viun3g03878 834 Pfam E1-E2 ATPase 272 444 - -
Viun3g03878 834 CDD P-type_ATPase_HM 142 796 - -
Viun3g03878 834 SUPERFAMILY HAD-like 462 794 IPR036412 -
Viun3g03878 834 NCBIfam HAD-IC family P-type ATPase 574 774 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g03878 834 NCBIfam HAD-IC family P-type ATPase 223 489 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g03878 834 MobiDBLite consensus disorder prediction 60 108 - -
Viun3g03878 834 Gene3D - 475 625 IPR023299 GO:0000166
Viun3g03878 834 SUPERFAMILY Calcium ATPase, transmembrane domain M 200 778 IPR023298 -
Viun3g03878 834 SFLD p-type atpase 446 747 IPR044492 -
Viun3g03878 834 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 61 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03878 Viun-Chr3 46190276 46214015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03878 98 818 Primary Pumps ATPases AT4G37270 75.867 0.0 1102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03878 K01534 - gmx:100776309 1402.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03878 3 46190276 46214015 Viun3g03878 3 46190276 46214015 ECH