Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03875 ATGACTCTCTTCTGTCAACCTCTCATAATCTCACTGCTTCTTCTCCTCGCTGTTAACCACTGTTCTGGACTCACTAGAGACGGCGTTCTCTTGCTTTCTTTCAAGTACGCTGTGCTCAACGACCCTCTTTACGTCCTCGCAAACTGGAACTACACTGACCAGACACCGTGTTCGTGGAACGGCGTTTCTTGTTCCACCGTACCAGCCACCAACGGTACCGAGTACCGCGTCACATCCTTGTCGCTTCCCAATTCTCAGCTTTTCGGTTCGATTCCCTCCGATCTGGGTTCCATTGAACATCTTCAAGTTCTGGACCTTTCCAACAACTCCCTCAACGGCTCTCTTCCCTCTTCGCTGTCCCAATCCTCCCAGCTTAGGTTCCTCAATCTCTCTAACAATTTAATATCTGGGGAGGTTCCGGAGTCCATCACCCAGCTTCAGAATCTCCAATGCCTAAACCTCTCCGACAATGCTTTGGCGGGAAAACTGCCTCACGATTTGTCCAACATGCACAACCTAACTCTCGCTTCCTTCAAGAACAACTACTTGGTTGGTTTTCTTCCCAGCGGCTTGAGAACGTTGCAGGTTTTGGATCTGTCTTCAAACCTTTTCAACGGGACTCTTCCCGCGGATTTCGGCGGAGACGCCATGCGTTACCTAAACATCTCCTACAACAGATTTTTCGGTGAAATCCCGAAGGAGTTCGCAGCAAACATTCCGGGGAACGCCACCGTCGACCTCTCGTTCAACAACCTCACAGGCCAAGTTCCCGAATCCGCCGTGTTTTTGAATCAGAACTGGAAATCGTTCTCCGGTAACGTCAACCTGTGTGGAGAACAGACGAAGAATGTGTGCCCTGTTCCTTCTTCGTCGTCCTCCAACCCGAAAGTTTCTGCTCCTATATCTCCTCCAGCAATCGCGGCAATCCCGCGGACCTTTGATTCTTCGGCAGCGCCGAAGGGGAAAAAAGGGAGTGGTCTGAAACGAGGAACGATTATAGGAATCGTTGTGGGAGACGTAATTGGGATAGCGATTCTGGGCATGATATTCGCGCAGGTGTATCGGTTGAAGAAAAAGAAGGAGGTGGTGAAGAAGGAGGCGGTTGTGAGGAGTGGGAGTGGCAGTGAGAGTGAGAGTTCGTGGGAGTCTAGAAGGTTTATGAGGTGGTCGTGTTTGAGTAAGAGAGCGGAAGAGGAAGAGTGTTCGGAGACAAGAAGCAGTTGTGATAGCGAGGTGGAGGGGCAGAAGCAGAAGGGTCCTCAACAGGAGGAGAAAACGGGGACTCTTGTGATCGTGGACGGTGAACGACAGCTTGAACTGGAAACGCTGCTGAAGGCTTCTGTGTACATATTGGGTGCGACAGGGTCCAGCATAATGTACAAGGCTGTCTTGGAAGATGGTATGTCCTTGGCGGTTCGGAGAATCGGGGAGAGCGGTGTGGAGCGGTTCAAGGACTTCCAGAACCAGGTTCGACTTATTGCTAAACTGGTGCACCCTAATCTGGTTCGCATTCGAGGCTTCTACTGGGGACACGATGAGAAGCTCATCATCTATGATTTCGTTCCAAACGGTTGTCTTGCCAATGTTCGTTACAGGAAGGTGGGCACCTCGCCGACTCATTTACCGTGGGAAATCAGGTTGAAGATAGCGAAAGGGGTGGCACGTGGGCTCACTTATCTCCACGAGAAGAAACACGTGCATGGAAACTTGAAGCCTAGCAATATTCTGCTGGGCAATGACATGGAGCCCAAGATTGGAGACTTTGGGCTTGAGAGAATAGTCACCGGTGACACCAGTTATAAGGCTGGCGGATCGGCGCGTATTTTTGGGAGCAAGAGATCCACGGCCTCGCGGGACAGTTTTCAGGACATTACCTATGGGCCAAGCCCGAGCCCGAGCCCGAGCCCTAGCTCCATGATGGGCTTATCTCCTTACCATGCTCCTGAGTCGCTGAGGAACCTGAAGCCTCACCCCAAGTGGGACGTGTACTCTTTTGGGGTAATGTTTCTTGAGCTTCTAACGGGGAAGATTGTGGTCTTGGATGATATGGGCCAAGGGCCTGGGGTTTTGACGGAGGATAAGAACCGGGCCTTGCGTATGGTTGACATGGCTATCAGGGCCGACATGGAGGGTAGAGAGGAGGCCCTGTTGGCCTACTTCAAGCTAGGGTATAGTTGTGTGTCTAGCGTTCCACTGAAAAGGCCTTCTATGAAAGAGGTGCTACAAGTTCTTGAAAAGATCTCATCCTCCTCTTCTTCTTCCTCATATTACTATAGCGTCTAA 2283 0.5112 MTLFCQPLIISLLLLLAVNHCSGLTRDGVLLLSFKYAVLNDPLYVLANWNYTDQTPCSWNGVSCSTVPATNGTEYRVTSLSLPNSQLFGSIPSDLGSIEHLQVLDLSNNSLNGSLPSSLSQSSQLRFLNLSNNLISGEVPESITQLQNLQCLNLSDNALAGKLPHDLSNMHNLTLASFKNNYLVGFLPSGLRTLQVLDLSSNLFNGTLPADFGGDAMRYLNISYNRFFGEIPKEFAANIPGNATVDLSFNNLTGQVPESAVFLNQNWKSFSGNVNLCGEQTKNVCPVPSSSSSNPKVSAPISPPAIAAIPRTFDSSAAPKGKKGSGLKRGTIIGIVVGDVIGIAILGMIFAQVYRLKKKKEVVKKEAVVRSGSGSESESSWESRRFMRWSCLSKRAEEEECSETRSSCDSEVEGQKQKGPQQEEKTGTLVIVDGERQLELETLLKASVYILGATGSSIMYKAVLEDGMSLAVRRIGESGVERFKDFQNQVRLIAKLVHPNLVRIRGFYWGHDEKLIIYDFVPNGCLANVRYRKVGTSPTHLPWEIRLKIAKGVARGLTYLHEKKHVHGNLKPSNILLGNDMEPKIGDFGLERIVTGDTSYKAGGSARIFGSKRSTASRDSFQDITYGPSPSPSPSPSSMMGLSPYHAPESLRNLKPHPKWDVYSFGVMFLELLTGKIVVLDDMGQGPGVLTEDKNRALRMVDMAIRADMEGREEALLAYFKLGYSCVSSVPLKRPSMKEVLQVLEKISSSSSSSSYYYSV 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03875 760 Pfam Leucine Rich Repeat 100 120 IPR001611 GO:0005515
Viun3g03875 760 Gene3D Ribonuclease Inhibitor 25 190 IPR032675 -
Viun3g03875 760 Gene3D Ribonuclease Inhibitor 191 287 IPR032675 -
Viun3g03875 760 Gene3D Phosphorylase Kinase; domain 1 412 520 - -
Viun3g03875 760 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 192 - -
Viun3g03875 760 FunFam Leucine-rich repeat receptor-like protein kinase 193 287 - -
Viun3g03875 760 MobiDBLite consensus disorder prediction 611 644 - -
Viun3g03875 760 FunFam Os07g0541700 protein 526 611 - -
Viun3g03875 760 SUPERFAMILY L domain-like 27 278 - -
Viun3g03875 760 SMART LRR_typ_2 191 214 IPR003591 -
Viun3g03875 760 SMART LRR_typ_2 146 170 IPR003591 -
Viun3g03875 760 SMART LRR_typ_2 98 122 IPR003591 -
Viun3g03875 760 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Viun3g03875 760 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 168 752 IPR046959 -
Viun3g03875 760 MobiDBLite consensus disorder prediction 400 420 - -
Viun3g03875 760 CDD STKc_IRAK 451 747 - -
Viun3g03875 760 SUPERFAMILY Protein kinase-like (PK-like) 450 748 IPR011009 -
Viun3g03875 760 MobiDBLite consensus disorder prediction 400 426 - -
Viun3g03875 760 Pfam Protein kinase domain 451 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03875 760 PRINTS Leucine-rich repeat signature 146 159 - -
Viun3g03875 760 PRINTS Leucine-rich repeat signature 101 114 - -
Viun3g03875 760 Gene3D Transferase(Phosphotransferase) domain 1 522 757 - -
Viun3g03875 760 ProSiteProfiles Protein kinase domain profile. 445 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03875 760 MobiDBLite consensus disorder prediction 611 628 - -
Viun3g03875 760 ProSiteProfiles Leucine-rich repeat profile. 100 122 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03875 Viun-Chr3 46136043 46138967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03875 10 758 Receptor kinase-like Gene Family AT4G37250 56.921 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun3g03875 Pkinase 6.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03875 - - pvu:PHAVU_003G240400g 1226.85