Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03873 ATGGAAGAGAAAATAGACACTGCAGACAAGAAGGTGCTGGCCGATATTGTAAAATTGGCACAAAAGAAAGGCCTCAGGGGTAAGCTAGGAGATTGGAAAGAATTCTTGGACAGTCATGATAAAAAGTTTGGGGCCAATTTGAGTGATCCATCAAAGCGACCCCATGAGTTATTGGCTACATTTCTAAAGTCTTTTTCGGAGGAGGAAGATTTGAAGTTTTTTGATAACATCATGCGACATCATGAAAATCAATACATGTTGGAGCGGCTGAAAGATAAATCCCATGAGTCCCCGGAGCAGAGGCTAGTTCAAATAACTCTGCAGCATCCGTTATATCCATTGGACTATTCATCTCCATCAATTGATGAGGGGTGGATAGTTATAAATGTTAAAAACAAGCCCAAGGTGATGAAGTCTACTACAATGCTTGCTGTCGATTGTGAAATGGTTCTTTGTGAAGATGGGACAGATGCGGTAGTTAAAGTCTGTGTGGTAGACCATAATTTAGAGGTCAAGCTGAATGAATTCGTAAAACCCAACAAAAAAATTGTGGACTACAGAACAGAGATCACTGGTATCTCTTCTCAAGATCTAGAGGCAGTGACTTGCTCCTTGGCTGATATACAGAAATCCATGAAGAAGTTGTTATCAAAAGGAACCATATTAGTGGGACACAGTTTGCATAATGATCTACGTGTGCTGAAGCTTGATCATGTCAGAGTGATTGACACTTCCTATATCTTCCAATCCGTGGATGGGTCTACGCACAGAAGACCTTCTTTGAATGGTTTATGTCAGGCTGTTTTGGGTTGTCCTGTACGGGAAAAAGGTGCTCCACATAATTGTCTAGATGATGCACGTGCAGCTATGAACCTCGTTCTTGCAAAGATCAAACATGGTGTTGATAGGGAATTTCCAATTTCACTTGCTCAAGAGCGTGTTCCAGAAAATGAGACAGCAAAGCTTTTTCTTCACAAGATACCAAATGCTGTAAACACCGAAGCACTGCATACCATTGTTCCTGGAGAATTCAGAACAGAACTGCAGCCTACCAGGAAAGTTCAAGGAAGACATTATTCTGCCTTAGCTGTTTTTAAAAATACACAAGAGGCTGAGGATGCCTATGAAAAAGTCGAAGGAATCCAACTAAAGGATAATCAAGGGCGTCCACAGAAACTTGTAACATTTCTGCCAAGTAAAGGCATGCCTGTCACTCTATATGTTCGGAAAATGGTAAGTGACGAACCACCCAATGACCAGAATGGATCTAATAAGAGGGCTTTACAAACGGATGAGGCAGTTGATGTTTCCAAGAAAGCAAAAATAGATAAAAACACTGAAGAAAATGCCCCAAGCTGTGATGTCCATTTAAACGAGATTGAAGCACTGAATCAACGATTAAAGCAAAGTGAATTGGAGATCGAATCATTGAAGAAAGAGCTGACACAGAAAGATTTTGAAATAACCACTCTGCATAAAATGGTGGCCTCTTTAAATAAGAGAAGAAAATAA 1512 0.4034 MEEKIDTADKKVLADIVKLAQKKGLRGKLGDWKEFLDSHDKKFGANLSDPSKRPHELLATFLKSFSEEEDLKFFDNIMRHHENQYMLERLKDKSHESPEQRLVQITLQHPLYPLDYSSPSIDEGWIVINVKNKPKVMKSTTMLAVDCEMVLCEDGTDAVVKVCVVDHNLEVKLNEFVKPNKKIVDYRTEITGISSQDLEAVTCSLADIQKSMKKLLSKGTILVGHSLHNDLRVLKLDHVRVIDTSYIFQSVDGSTHRRPSLNGLCQAVLGCPVREKGAPHNCLDDARAAMNLVLAKIKHGVDREFPISLAQERVPENETAKLFLHKIPNAVNTEALHTIVPGEFRTELQPTRKVQGRHYSALAVFKNTQEAEDAYEKVEGIQLKDNQGRPQKLVTFLPSKGMPVTLYVRKMVSDEPPNDQNGSNKRALQTDEAVDVSKKAKIDKNTEENAPSCDVHLNEIEALNQRLKQSELEIESLKKELTQKDFEITTLHKMVASLNKRRK 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03873 503 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 311 IPR047021 GO:0004527
Viun3g03873 503 SMART exoiiiendus 141 302 IPR013520 -
Viun3g03873 503 Gene3D - 137 309 IPR036397 GO:0003676
Viun3g03873 503 MobiDBLite consensus disorder prediction 413 450 - -
Viun3g03873 503 MobiDBLite consensus disorder prediction 431 450 - -
Viun3g03873 503 CDD REX1_like 143 294 IPR034922 -
Viun3g03873 503 SUPERFAMILY Ribonuclease H-like 142 297 IPR012337 -
Viun3g03873 503 Coils Coil 453 487 - -
Viun3g03873 503 Pfam Exonuclease 144 292 IPR013520 -
Viun3g03873 503 MobiDBLite consensus disorder prediction 416 430 - -
Viun3g03873 503 FunFam Small RNA degrading nuclease 3 137 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03873 Viun-Chr3 46080804 46085961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03873 138 270 C2H2 Transcription Factor Family AT3G27970 29.530 2.49e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03873 K14570 - gmx:100785565 756.903