Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03868 ATGGCCGTGGAGCTCATGACAGGCTACAGAACCACCACTTTCACCACCAAAGCAGAGGAAAATGCCGTCCAGGAAGCCGCCTCCGGTTTGGAGAGCGTCGAGAAGCTCATCAGACTCCTCTCTCAGACTCCCCAACAATACAACTCCTCCAATCAAATAGCAATCGACTGCAAGGCCGTCGCTGACCTAGCAGTTTCCAAGTTCAAAAATGTCATTTCGCTACTTGGCCCAGACCCAAGCCCAGGCCCATCCCCAACCCCAACCCCAACTCCAACCGGCCACGCCCGCTTCCGAAGAGCTCCTCTTCCTCCTCCTCCTCCTCCGCCGCCTTCCTCACAACCCTCCCAGCCTCCCGTCTTCCACGCCACCCCTCTGCACCAAATCCCCAAAACAGACACCACCCTCAACGACTCCTCTTCCAAAACCATTTATTTCTCCTACCCCTCCCCTGCAACTTCCTTCATCTCCTCCCTCACTGCCGACGTCCACACCAAACAACCCTCTTCCTCCTCGCCGCCTCCGCCGCCGCCGGGCTCTTTCCACATAACCACTCTCTCCCACGTCTCATCCGCCGGGAAGCCTCCCCTCTCCTCCTCCTCCTCTTTCAAGAGGAAGTGCAGCTCTGAGAACTTGCCTTCTGGAAAGTGCGGTAGCTCCTCTAGCCGCTGTCATTGCTCCAAAAAGAGTAGGAAAATGAGGTTGAGGAAGGTGGTGAGGGTACCGGCTATAAGCTTGAAGATGGCTGATATTCCACCGGATGATTATTCTTGGAGAAAGTATGGACAGAAACCAATCAAAGGATCCCCTCATCCAAGGGGTTACTACAAGTGCAGTAGCGTGAGAGGGTGTCCAGCGCGAAAGCATGTGGAGCGAGCTTTGGATGACCCAGCTATGCTGGTGGTAACCTACGAGGGGGAGCACAATCACACTCTCTCTGCGGCTGATGCTACTAACCTTATTCTTGAATCATCTTGA 975 0.5487 MAVELMTGYRTTTFTTKAEENAVQEAASGLESVEKLIRLLSQTPQQYNSSNQIAIDCKAVADLAVSKFKNVISLLGPDPSPGPSPTPTPTPTGHARFRRAPLPPPPPPPPSSQPSQPPVFHATPLHQIPKTDTTLNDSSSKTIYFSYPSPATSFISSLTADVHTKQPSSSSPPPPPPGSFHITTLSHVSSAGKPPLSSSSSFKRKCSSENLPSGKCGSSSSRCHCSKKSRKMRLRKVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPAMLVVTYEGEHNHTLSAADATNLILESS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03868 324 Gene3D WRKY domain 239 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g03868 324 ProSiteProfiles WRKY domain profile. 246 312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g03868 324 Pfam Plant zinc cluster domain 203 249 IPR018872 -
Viun3g03868 324 SMART WRKY_cls 251 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g03868 324 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 23 317 IPR044810 GO:0003700
Viun3g03868 324 FunFam WRKY transcription factor 65 235 312 - -
Viun3g03868 324 MobiDBLite consensus disorder prediction 162 204 - -
Viun3g03868 324 Pfam WRKY DNA -binding domain 253 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g03868 324 MobiDBLite consensus disorder prediction 182 204 - -
Viun3g03868 324 SUPERFAMILY WRKY DNA-binding domain 248 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g03868 324 MobiDBLite consensus disorder prediction 75 124 - -
Viun3g03868 324 MobiDBLite consensus disorder prediction 98 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03868 Viun-Chr3 46045646 46047396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03868 19 309 WRKY Transcription Factor Family AT2G24570 44.688 4.28e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun3g03868 WRKY 4.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03868 - - vum:124838807 430.254