Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03860 ATGCATGGTGGTAGCAGAAGGGCAACGGCAGCACTGCTCCTTCTGTTGCTACAGATAATCAGCCTCGCCGATTGCGGTGGCTCCACGGTGTCCTCCGACGCGGTGTGGTTGCTGTCGTTTAAACGGGAAGCGGACCAAGACAACAGGCTCCTCTACACTCTCAACGAGCCGTACGACTACTGCGAGTGGGAGGGCGTGAAGTGCGCACAAGGGAGAGTGGTCCGCTTCGTCGTCCAATCCATGGGCCTGCGCGGCCCATTCCCTCCGGACACCCTCACGAAACTGGACCAGCTCCGCGTCATGAGCCTCCGCAACAACTCCCTCTACGGGCCCATCCCCGATCTCTCCCCTCTCACCAACCTCAAGTCCCTCTTCCTCGACCACAACAACTTCTCCGGTTCCTTCCCCCCCTCTCTTCTTCTCCTCCACCGCCTCCTCACTCTCTCCCTCTCCCACAACAATCTCTCCGGTTCGATCCCGGTTCGGCTCACTCTCCTCGACCGTCTCATCGCCCTCCGCCTCGACTCCAACAACTTCTCCGGCACGCTCCCTCCGCTCAACCAAACCGCGCTCAAACTGCTCAACGTCTCCAACAACAACCTCACCGGTCCTGTTCCCGTTACCCCGACCCTCTCTAAACTCAACGCTGCCTCCTTTTCGGGAAACCCTGGCCTCTGCGGGGAGATTGTTCACCGAGAGTGTGGCTCGCGCTCCCGCTTCTTCGGCCCCGCCACGTCCACCTCCACGGCGCCGTTGAGTCAGAGCGAACAGTCTCAGGGTATTTTGGTTGTGCCTGCTTCTGCACAAACAAAGCGTCATCAGAAGACTGGGCTAGTGGTTGTCGGCTTTGTTGTGGCGGTTGTTGTTGTGAGTGGTTTTGTGTTGTCTGTGGGTTCGGTGGTGAGAAGGAGGCAGGCGGCGGCGGGGAAAGCGGTGGTTGCGGAGGGGGATGAGGTGGAGGGGGTTGTGGAGGTGGAGGAGAGGGAGGTGAAGGTGAGGAGGATGGAGGAGGCGCACAGGAGTGGGAAGCTGGTGTTCTGCTGCGGGGAGGTGCAGCAGTATACGCTGGAGATGCTGATGCGGGCTTCGGCGGAGTTGCTGGGGAGGGGGAGCGTGGGGACGACGTACAAGGCGGTGCTGGATTCGCGGTTGATTGTGACGGTGAAGAGGTTGGATGGGGGGAAGAGTGGGGGGAGTGATGGGATGGTGTTTGAGCGCCACATGGAGGCTGTGGGGAGGCTTCGCCACCCCAATTTGGTGCCTTTGAGGGCTTATTTTCAGGCCAAGGGAGAGAGGCTTGTCATATACGATTATCAGCCCAATGGCAGCCTCTTCAACCTCGTTCACGGTTCAAGATCGGCGAGGGCGAAGCCTTTGCATTGGACATCATGCCTGAAAATTGCCGAAGATGTGGCACATGGACTTGCTTATATACATCAAGTTTCAACTCTAATTCATGGCAACCTGAAATCTTCTAACGTTCTTCTAGGGACGGACTTTGAAGCCTGTATTACGGACTATTGTTTGTCCTTCTTTGCAGATCCTTCGTTCACTGAAGATTCCGATTCTGCGGCTTATAAAGCACCCGAGGCTCGCAACTCTAGCCGCAGAGCCACATCCAAGTCTGATGTTTATGCTTTTGGAGTGCTTCTATTAGAGCTTTTGACGGGTAAACACCCTTCCCAACATCCTTTTCTTGCACCAGCGGATTTGCAAGATTGGGTGAGAACAATGAGGGATGATGATGGCAGTGAAGACAACCGGCTAGAGATGCTCACGGAGGTTGCCAGTATTTGCAGTGCAACCTCGCCGGAGCAGAGGCCAGCAATGTGGCAAGTCCTTAAGATGATACAGGGAATAAAGGACAGCGTTTCGATGGAGGATAATTCATTTACTGGCATCTCTTAG 1908 0.5608 MHGGSRRATAALLLLLLQIISLADCGGSTVSSDAVWLLSFKREADQDNRLLYTLNEPYDYCEWEGVKCAQGRVVRFVVQSMGLRGPFPPDTLTKLDQLRVMSLRNNSLYGPIPDLSPLTNLKSLFLDHNNFSGSFPPSLLLLHRLLTLSLSHNNLSGSIPVRLTLLDRLIALRLDSNNFSGTLPPLNQTALKLLNVSNNNLTGPVPVTPTLSKLNAASFSGNPGLCGEIVHRECGSRSRFFGPATSTSTAPLSQSEQSQGILVVPASAQTKRHQKTGLVVVGFVVAVVVVSGFVLSVGSVVRRRQAAAGKAVVAEGDEVEGVVEVEEREVKVRRMEEAHRSGKLVFCCGEVQQYTLEMLMRASAELLGRGSVGTTYKAVLDSRLIVTVKRLDGGKSGGSDGMVFERHMEAVGRLRHPNLVPLRAYFQAKGERLVIYDYQPNGSLFNLVHGSRSARAKPLHWTSCLKIAEDVAHGLAYIHQVSTLIHGNLKSSNVLLGTDFEACITDYCLSFFADPSFTEDSDSAAYKAPEARNSSRRATSKSDVYAFGVLLLELLTGKHPSQHPFLAPADLQDWVRTMRDDDGSEDNRLEMLTEVASICSATSPEQRPAMWQVLKMIQGIKDSVSMEDNSFTGIS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03860 635 FunFam Probable inactive receptor kinase At5g67200 32 142 - -
Viun3g03860 635 FunFam Leucine-rich repeat receptor-like protein kinase 144 236 - -
Viun3g03860 635 SUPERFAMILY Protein kinase-like (PK-like) 365 621 IPR011009 -
Viun3g03860 635 Gene3D Phosphorylase Kinase; domain 1 325 438 - -
Viun3g03860 635 SUPERFAMILY L domain-like 29 227 - -
Viun3g03860 635 Gene3D Transferase(Phosphotransferase) domain 1 440 632 - -
Viun3g03860 635 ProSiteProfiles Protein kinase domain profile. 361 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03860 635 Pfam Protein kinase domain 364 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03860 635 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 623 IPR046959 -
Viun3g03860 635 Gene3D Ribonuclease Inhibitor 30 188 IPR032675 -
Viun3g03860 635 Gene3D Ribonuclease Inhibitor 189 236 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03860 Viun-Chr3 45863543 45867145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03860 28 629 Receptor kinase-like Gene Family AT3G50230 53.943 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun3g03860 Pkinase 7.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03860 - - gmx:100783086 919.842