Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03855 ATGGAACAAGGAGAAGGAGGAAGCACCAGGAGGAGAGGGAAAGAGGGTGAAGCCACGCGCTACAAAGGAATCAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAGATTCGGGAACCCAACAAGCGTTCACGGATTTGGCTCGGCTCCTATTCCACGCCCGTCGCGGCGGCGCGTGCTTACGACACCGCTGTTTTCTATCTTCGGGGGCCCTCCGCCCGCCTCAACTTCCCCGACCTTCTCGCCGTTGAGGGTCCTGTAGCCGCTGCCTCCGACATGTCTGCTGCCTCCATCAGGAAGAAGGCCACCGAGGTCGGCGCCAGAGTCGACGCGCTCCACCGCCAGCAACCGCATGCTCCCGTCGCAGGAGAATTCGCCGACCGGGTCGACCTCAATAAGACACCCGAACCCGAAAATTCGGATTGTGACTGGGATGGGGATTAG 441 0.61 MEQGEGGSTRRRGKEGEATRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLAVEGPVAAASDMSAASIRKKATEVGARVDALHRQQPHAPVAGEFADRVDLNKTPEPENSDCDWDGD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03855 146 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Viun3g03855 146 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Viun3g03855 146 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Viun3g03855 146 MobiDBLite consensus disorder prediction 113 146 - -
Viun3g03855 146 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Viun3g03855 146 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 140 - -
Viun3g03855 146 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Viun3g03855 146 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Viun3g03855 146 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Viun3g03855 146 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Viun3g03855 146 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03855 Viun-Chr3 45823505 45824469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03855 21 145 AP2-EREBP Transcription Factor Family AT3G50260 64.706 7.05e-54 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g03855 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03855 K09286 - gmx:100789373 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03855 3 45823505 45824469 Viun3g03855 3 45823505 45824469 ECH
Viun2g02130 2 29394865 29395856 Viun3g03855 3 45823505 45824469 PCT