Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03834 ATGAATCCTCCTGAAGGTGACGGCTCAGTTGGAGAAGCGAACGAAAACAACAAGAATGAGGAAGGGCTCCATGAAGAAGGGCTTGCTGAGACAGAAGTGAATCTCCCTGAAGAAGGAGACAACAACAACAACAACAACGATGTTCCTCTTCATGAAACCCTTAATGCTGTAGCACTGGATTCTAACATGTCCGCTTCAAGCTTCCACGTTGGAAGCAGCTCGAACACCGTGAACATTCCAAGAAAAAGAAACTTCGGTAGTTCTGGACATTTTTATCAGGGTGAAAGTTCAAACATGGGTCAACAGCAAGTGACAGGAGAGGCTAAAAGGCTTGCTACTGAGTCTGAGGGTGGAGCTAACAACAATGTGAGCCCACACAATGCAGGAACACCTATTCCACCTATTCCACCACCACCCAATGCCGGTGCTAACAGAAACGAGAATACTGATACCGGGAGAAGAGCTTCTTATGCTACACTACCAGGCCAAGCGAGTCTGTATTTCAACGGAGCTTCAACACATCCCGCTCAGCATCCTCTCCAACGCATAGGTTCTGTTCAGCCATTATCTTTTCAGGGTAGTGCATTCATGCGCAGTGCTACCTCCACTGTGAACAGCGTAACCGTGAGGACTACTCCTCCCACCCGCTGTCCACACCCAAGAGTTGATATTATAATTCCCTTTTATGAACATGGTAGCTCTTCAACCCGGCCTCCGCCACAGGCCACACCAAGAATCAACCATTCTGCTGCAGGAAACAGTTCTGCCACTCAGAACAATCAAAATTCTGCACTTCCACCCAATTTTATTTCTCCTGAATTGAGAGGAAGACTTCCATCTGAGGTTCAATCTATCTTGGATTCTCTGAGCAATGGCCGCGGTCTAATCTTTGAGATAGAGAACTCTGAACCATCTACGGCGGGACTAAGTCTCCAAACGATCATGCAGCACATGGAGCGTGAGACTTTGGTGGATGTTGATGGAGATGACCCAGTAGAACATCAAAAGAGATGCACCATCTGTTTGGAAGAATTTGAAAACGGATCGGAAATCGGGAAGATGCAGTTATGCGATCACAAGTTTCACTTTGATTGCATCAAACAGTGGCTCGTGCAGAAGAACCTTTGCCCCGTGTGCAGAAGAGTTGCATTGAACAGGCATCTGAACGGCCCAAACAGAGAATATGGTTATTTCTTTATCTAA 1203 0.4663 MNPPEGDGSVGEANENNKNEEGLHEEGLAETEVNLPEEGDNNNNNNDVPLHETLNAVALDSNMSASSFHVGSSSNTVNIPRKRNFGSSGHFYQGESSNMGQQQVTGEAKRLATESEGGANNNVSPHNAGTPIPPIPPPPNAGANRNENTDTGRRASYATLPGQASLYFNGASTHPAQHPLQRIGSVQPLSFQGSAFMRSATSTVNSVTVRTTPPTRCPHPRVDIIIPFYEHGSSSTRPPPQATPRINHSAAGNSSATQNNQNSALPPNFISPELRGRLPSEVQSILDSLSNGRGLIFEIENSEPSTAGLSLQTIMQHMERETLVDVDGDDPVEHQKRCTICLEEFENGSEIGKMQLCDHKFHFDCIKQWLVQKNLCPVCRRVALNRHLNGPNREYGYFFI 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03834 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 60 384 IPR045191 GO:0061630
Viun3g03834 400 MobiDBLite consensus disorder prediction 17 31 - -
Viun3g03834 400 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Viun3g03834 400 MobiDBLite consensus disorder prediction 1 49 - -
Viun3g03834 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 384 IPR013083 -
Viun3g03834 400 MobiDBLite consensus disorder prediction 67 128 - -
Viun3g03834 400 MobiDBLite consensus disorder prediction 234 268 - -
Viun3g03834 400 SUPERFAMILY RING/U-box 337 385 - -
Viun3g03834 400 MobiDBLite consensus disorder prediction 67 154 - -
Viun3g03834 400 Pfam Ring finger domain 337 380 IPR001841 -
Viun3g03834 400 SMART ring_2 338 379 IPR001841 -
Viun3g03834 400 MobiDBLite consensus disorder prediction 231 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03834 Viun-Chr3 45625201 45632089 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03834 306 384 C3H Transcription Factor Family AT2G15530 39.506 7.03e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03834 - - vun:114179757 750.355