Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03833 ATGAACCCTCATGTTCAAGGTGACTCAGCCGGAGAAGGTAATGCAAGCAACCAAAATTACTATAGGCCCCGGCTTTCTAGTGAAACACAGGAGAGGGTACTTCCCTTATTTCCCCTCTTTGCCACTGAGGAAGCGTTTCCTCAGCTAGATATGAATCTCCCTCAACCAGGTGCCAACAACATTAGAGCCACAACTGATGTTCCATTTAATATTGTAGCACCGGAATCAAACATTTTTTCTTCAAGCTCCTCCCGTGCTGGAACTCCTCCAAATCCAATGGAAAATTTAGACTTGTGTCTGAACGTTGGCTTAAGCCGTAGTCACGGTGCAGCAATATCTTCTGCTGCGATTCCAAGTTCCAATCCTGCACGTAGCGTGCATGGGAGCAGCTTAAACTCAGTGAACATTCCAAGAAAAAGATCTGTCCCTGCTCATGGTTCTGGAGGACTTCATCTGGGTGAAAGTTCAAGCATGGGTCAAGGGACAGGAGAGGTCAAAAGACTTGCTACTGAGTCTCAGGTGAGAGGTAGCAACTATGTGAACCCGACACCACCATCACGTTCTGTGGTGCAACAACAGCATCAATTCCTCGGTGGCCGCCATGTTAATCCAAACAATGCAGGGACACCTTTTCCTCCACCCAGTACTCTTTCAATTGGGCTGACTAATACTGATGATGAAAGAAGAGGTTATCATGCTCCGATTCCGAGCCAAGCGAGTTTGCCTTTCAACGGAGCCTTATCACATTCCCAACTGTCTCCTCTCCAACCCTCACATTCCGTTCGGCCTCTATCTTTACTCAGTAGTTCATTCATGTCAAGTTCTGCCCCCAGCGTTAACAACCAAACATCCTCTCCGTGTCCTCACGCTAGAGTCGATAATATTAATATGATTCCATCTTATGAACATGGAAATGACATGTTTGGTCCGGTAGTTACATCCACTCATCGACCAAACAGGTTTTACTTTGATACTGATCCAGAGACTGCTAGAATGGCTCTTTTATATGGTCTCCCCCGTCAGTTCGGTGCCCCGGAATCGGAACCACTGCAATTTCTACCTGGAATTGCGGGCAATGGTGGCAGAGTTACTAATGCTGGAGCGAATACGTACCACCCTCTGAGTGCTACAGCATGGTTTCTTCCACAGGGCTCAGGAGGAATGAACCCTTCTGCTACAGCAAGTAGTTCTGGCACCCACAACCATCATAGGCCAGTACCACAAATTCCTTCTGTTGGAGCACTAAGAGGGTTTCCATCTGAGATTGAGCACCCTCAAGCATTTGGAACGTCGCAAGCATTCACGGGACTGAGTCTGGAAACGATAATGCAGTTCATGGAGCGTGAGATTTTCTTGGTTGTTGATGGAGATGACTCAGAAGAAACTAAAGAAAAATGCCCCGTCTGTCTGGAAGAATTTTGCAGGGGAGAGGATATTGGGAAGCTGCATTTGTGTGTGCACAAGTTTCACTTTGATTGCATTAAAGAGTGGCTCATGCAGAGGAATCTTTGCCCCGTTTGCAGAAGAACCGCGTTGGAAAGGCGTAATGACCGAAGAATGGTATATATACTTGAATAA 1578 0.467 MNPHVQGDSAGEGNASNQNYYRPRLSSETQERVLPLFPLFATEEAFPQLDMNLPQPGANNIRATTDVPFNIVAPESNIFSSSSSRAGTPPNPMENLDLCLNVGLSRSHGAAISSAAIPSSNPARSVHGSSLNSVNIPRKRSVPAHGSGGLHLGESSSMGQGTGEVKRLATESQVRGSNYVNPTPPSRSVVQQQHQFLGGRHVNPNNAGTPFPPPSTLSIGLTNTDDERRGYHAPIPSQASLPFNGALSHSQLSPLQPSHSVRPLSLLSSSFMSSSAPSVNNQTSSPCPHARVDNINMIPSYEHGNDMFGPVVTSTHRPNRFYFDTDPETARMALLYGLPRQFGAPESEPLQFLPGIAGNGGRVTNAGANTYHPLSATAWFLPQGSGGMNPSATASSSGTHNHHRPVPQIPSVGALRGFPSEIEHPQAFGTSQAFTGLSLETIMQFMEREIFLVVDGDDSEETKEKCPVCLEEFCRGEDIGKLHLCVHKFHFDCIKEWLMQRNLCPVCRRTALERRNDRRMVYILE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03833 525 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 110 512 IPR045191 GO:0061630
Viun3g03833 525 MobiDBLite consensus disorder prediction 1 26 - -
Viun3g03833 525 MobiDBLite consensus disorder prediction 387 406 - -
Viun3g03833 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 512 IPR013083 -
Viun3g03833 525 MobiDBLite consensus disorder prediction 116 190 - -
Viun3g03833 525 MobiDBLite consensus disorder prediction 116 137 - -
Viun3g03833 525 Pfam Ring finger domain 465 508 IPR001841 -
Viun3g03833 525 MobiDBLite consensus disorder prediction 387 404 - -
Viun3g03833 525 SUPERFAMILY RING/U-box 456 515 - -
Viun3g03833 525 ProSiteProfiles Zinc finger RING-type profile. 466 508 IPR001841 -
Viun3g03833 525 SMART ring_2 466 507 IPR001841 -
Viun3g03833 525 MobiDBLite consensus disorder prediction 153 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03833 Viun-Chr3 45616572 45620488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03833 435 513 C3H Transcription Factor Family AT2G15530 40.741 4.22e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03833 - K10635 vra:111241966 702.205