Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03832 ATGAACCCTCATGGTGGCTCAGCTGGAGAAGCTAATGCAAACAACCAAAATTATACGAGGCCTCACTTTTCTGGTCATTCACAGGAGATGCCACATCCCTTATTTCCCTACTTGGTTATGGACCGCACGTTTCCTCAGCCAGTATTGAATCTCCCTGAAGAAGGAGCCTACAACATTGGTGCCACAACTGATGTTCCACTTCAGGAAAACCCTAATGTTGTACCACCTGAGGAAGAAGATGTAGACAGGTATCTGAACTTTGACATGATCCCTGAGGTTGCAACAATATCTCCTGCCATGGATCCAAGTTCAAACATTGTTGCACTTGGCGTGAATGAAAGCGACTCAAACAGCGTCAACAACATATCAAGAAAAAGAAGCCTCCCTGAAAGTGCTTCTCGACAGATAGAGGAACCCAAAAGGCTTGATACTCGGTCTCAGGTGAGAGATACCCGCAATGTGATTCCACAGAGTGCAGGAACAACGATTCCATCAACCAACATGAGAGCTGACTCCATGGATAATACTAATCATACAACAGGTTCTCATGTTCAACCTTATACTTCAACACATTCCCTTCACTCATCTTTCCAACCCTCACACCCCGTTCAGCCTCCATCTTTTCACAGTACTCCATTCATGTCTAATCCTGCCTTGACCGTAAACACCATGACCGCCATGAATGCTCCTCACTCAATATCCTCTCCCTTTCCACACGCTGGAATGGATATTATAGCTCCAATTTATGAACGTGGGAGCTACATGTTTGGTCCGGTCGTAACATCAATGGGTAATTTTCCCACTTATCGACCAAACTGGTCTTACGTTGATACTGATAGAGATACTGCTAGAAGGAGTCTTGCTTTTGTTGTCCCCCATCCGTTCGAACCCCCGGAATTGCAAGCAGTGCAGTTACTGCCTGGAATTGTGGGCAATGGTGGCGGAGTTAGTATTGGTGGAGCGAATACTTACCACCCTCTGACTGATCATGCAAGCTCTTCAACTTGGTTTCCTCCACAGGGCTCAGGAGGAATGCACCATTTTGGTGCAGTAATTAGTCCTGCCACTCAGAATCTCCAGAGTCTTATGCAAACATCATCACCTGCAATTCCACCCATTTTCATTCATGAACCCGCTTTTCCGCTACCACAATTTCCTTCTGAGGAAACCAGAAGAGGACTTCCAAATGAGGTTCAATCTCTCCTTAATTCTTTAAGCGATGGTCAAGCTCTCAGGTTCGAGGAGTTGATGATTCTTGACTACTCACTTGTGTTACGTGCGTTTGAGAGAGAGCACCCTGAACTATTTGAGACATCATCGCGATCCACTGGCCTGAGTCTTGAAACGATAACGCAATACATGGAGCGTGAAACTTTCTTGGTTGTTGATGGAGATGATTCAGAACAAAATAAAGAAAAATGCATCGTTTGTATGGAAGAATTTTGCAACGGAGAGGGTATTGGGAAGCTGCATTCTTGTGTGCACAAGTTTCACTTTGATTGCATCAAAACTTGGCTCAACCGCAAGAACGTTTGCCCCGTCTGCAGAAGAACTGGGTTGGAAACGCCTAATGACCAAAATGTAGAAGGTAAAGCTGCAGATGCAGCTGTGGTTCACGATGAAGGTCACAGTCAATAG 1638 0.453 MNPHGGSAGEANANNQNYTRPHFSGHSQEMPHPLFPYLVMDRTFPQPVLNLPEEGAYNIGATTDVPLQENPNVVPPEEEDVDRYLNFDMIPEVATISPAMDPSSNIVALGVNESDSNSVNNISRKRSLPESASRQIEEPKRLDTRSQVRDTRNVIPQSAGTTIPSTNMRADSMDNTNHTTGSHVQPYTSTHSLHSSFQPSHPVQPPSFHSTPFMSNPALTVNTMTAMNAPHSISSPFPHAGMDIIAPIYERGSYMFGPVVTSMGNFPTYRPNWSYVDTDRDTARRSLAFVVPHPFEPPELQAVQLLPGIVGNGGGVSIGGANTYHPLTDHASSSTWFPPQGSGGMHHFGAVISPATQNLQSLMQTSSPAIPPIFIHEPAFPLPQFPSEETRRGLPNEVQSLLNSLSDGQALRFEELMILDYSLVLRAFEREHPELFETSSRSTGLSLETITQYMERETFLVVDGDDSEQNKEKCIVCMEEFCNGEGIGKLHSCVHKFHFDCIKTWLNRKNVCPVCRRTGLETPNDQNVEGKAADAAVVHDEGHSQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03832 545 MobiDBLite consensus disorder prediction 115 148 - -
Viun3g03832 545 SUPERFAMILY RING/U-box 466 524 - -
Viun3g03832 545 MobiDBLite consensus disorder prediction 187 207 - -
Viun3g03832 545 MobiDBLite consensus disorder prediction 1 29 - -
Viun3g03832 545 MobiDBLite consensus disorder prediction 7 24 - -
Viun3g03832 545 MobiDBLite consensus disorder prediction 115 129 - -
Viun3g03832 545 Pfam Ring finger domain 473 516 IPR001841 -
Viun3g03832 545 MobiDBLite consensus disorder prediction 525 545 - -
Viun3g03832 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 519 IPR013083 -
Viun3g03832 545 ProSiteProfiles Zinc finger RING-type profile. 474 516 IPR001841 -
Viun3g03832 545 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 112 520 IPR045191 GO:0061630
Viun3g03832 545 MobiDBLite consensus disorder prediction 130 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03832 Viun-Chr3 45605476 45609164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03832 391 523 C3H Transcription Factor Family AT2G15530 32.680 4.79e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03832 - K10635 vra:111241966 382.874