Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03831 ATGTCTTCTTCCTCCTCTTCCACACAGGACCAAATCTCCCTTCCCCTTCCTCACACGCTTCTTCCTTCTCCCCTCACAACCCCCCAGGGTAACCACCCACGCAATCCCATCTCCATCTCCATGCTTGGCTTCTGCACCTCCAAAACTGCACTACGAGATGGGATCTCGGCCTACAAGGCTTCTTCCTCGCTGCCACTCAATACTCAGAACGAAACCGATGACTACGACTGCGAGAGTGAGGAGGGTGAAGCGTTGGTAGAAGAGGTTCCAATTCCACCCAACTGCTTTCGTTCTGGGAGTTCATCCAAAAGAAGCAGAGCGGCGGAAGTTCATAACTTGTCTGAAAAGAGGAGGAGGAGTAGGATCAATGAGAAATTGAAGGCTTTGCAAAATCTAATTCCAAATTCCAACAAGACTGATAAGGCTTCGATGCTTGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTTGTTTCCAGAAGGTTTGCAACCCCCGCAATTTTCTCAGATGAGGATGGATTCAAGTGAAGAAAACAGGTGTATCCCTTCAAACACTACTACTACTCTCCCTATGCAGCAAGAAAACACCATACCCTATTCATCCAATTTGCGTAACAAAGAAATTGTGGCAGATCAGCCATCCATGCCCACCCCATCATATATATTCAACTCACAAACTTCCTTTAGATTGGAATCTCATATTCCTGACAATTTAACATCATTTCAACTCAGAGCTTTTTCTGAGATATGCAGAGAAGACATACTGCAGCACCAACATTTAAACGCAAACCATTCAGATACCAATCCATTAGGTTGTTCTCAAGGCACATTGGCTACTGCATCATCAGTTTCCTTTGATGTCCAAAAATCTGCAGTTAAAGACAACAGCTCTTTGGGAAACTGCATCCCTGGAAGTGATCAATCTGAACTACTAGTCTTGAGAAATAGTGAGCCCAACATTATTCTGACCCAGCGGTTAAGTCGGTAA 1038 0.4441 MSSSSSSTQDQISLPLPHTLLPSPLTTPQGNHPRNPISISMLGFCTSKTALRDGISAYKASSSLPLNTQNETDDYDCESEEGEALVEEVPIPPNCFRSGSSSKRSRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMLFPEGLQPPQFSQMRMDSSEENRCIPSNTTTTLPMQQENTIPYSSNLRNKEIVADQPSMPTPSYIFNSQTSFRLESHIPDNLTSFQLRAFSEICREDILQHQHLNANHSDTNPLGCSQGTLATASSVSFDVQKSAVKDNSSLGNCIPGSDQSELLVLRNSEPNIILTQRLSR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03831 345 Coils Coil 145 165 - -
Viun3g03831 345 MobiDBLite consensus disorder prediction 96 119 - -
Viun3g03831 345 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 62 272 IPR031066 -
Viun3g03831 345 Pfam Helix-loop-helix DNA-binding domain 110 156 IPR011598 GO:0046983
Viun3g03831 345 MobiDBLite consensus disorder prediction 1 16 - -
Viun3g03831 345 MobiDBLite consensus disorder prediction 1 34 - -
Viun3g03831 345 SMART finulus 112 161 IPR011598 GO:0046983
Viun3g03831 345 FunFam Basic helix-loop-helix transcription factor 101 164 - -
Viun3g03831 345 CDD bHLH_AtPIF_like 107 168 IPR047265 -
Viun3g03831 345 Gene3D - 101 165 IPR036638 GO:0046983
Viun3g03831 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 166 IPR036638 GO:0046983
Viun3g03831 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 155 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03831 Viun-Chr3 45596147 45599003 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03831 70 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 52.252 1.27e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g03831 HLH 1.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03831 - - vun:114177198 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03831 3 45596147 45599003 Viun3g03831 3 45596147 45599003 ECH
Viun2g02119 2 29317292 29320606 Viun3g03831 3 45596147 45599003 PCT