Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03827 ATGGATTGGGTTCGGGGAGACGCCGTCGGTCGAGGAAGCTTCGCCACCGTTAGTTTAGTCATTCCGACTACCAATCCCTCTCAGTTTCCGTCTTTAACCGCCGTCAAGTCCTCCCAGGCACTCACCTCGTTTTGGCTCAAGAATGAGAAACACGTGCTCGATCACCTAGGTTCTTGTCCGAGGATCATTCGCTGCTTCGGAGACGACTACAGTTTCGAAAATGGTGTTGAGTACTACAATTTGTTCCTCGAATACGCCGCTGCCGGGAGTCTCGCAGACAAGGTAAACAATTGCGGTGGCCGGATTGCCGAGCCTGAGGTTCGGCGTTACACGAGGTCCATCGTGGAAGGTTTGAATCACGTGCATCAAAACGGGTTTGTCCACTGCGACATAAAGCTGCAAAACATCCTCGTATTCGACGACGGGGAAATCAAGATTGCGGATTTCGGTCTGGCTAAGGAGGCAGGGGAGAGAAAACAGAGGAAGAGTGAATGCAGGGGGACTCCGCTGTTTATGTCGCCGGAGCAAGTGATCGACGGTGAGTGTGAGTCGCCGGCGGATATATGGGCTCTGGGGTGCGCCGTTGTGGAGATGGTGACCGGGAAGCCTGCGTGGAAGGTTGAGAAGGGGTCGAGTATGTGGTCGTTGATGCTTCGAATTGGGGTGGGAGAAGAGATTCCTGAGATACCTGAGAATTTATCGAAAGAGGGGAAGGATTTTATCGAGAAGTGTTTTGTTAAGGATCCTAGAAAGAGGTGGAGTGCAGAGATGCTTTTGAAACACCCTTTTGTTTCTGATGACACTGTTTCATTTAAGCGCCTCCACGAATCGCCCAGAAGTCACTTCGATTTCCCCGACTGGGTTTCTAGTGCGACTTCTTCACTTCCCAGTTCGCCGGAATCTCAATCGCCGTGGAATTTTGACGAGTCCCGTTTGGAGGGTTTCTGCTCGCCGGAGGACCGGCTCCGTCAGATATCAACGGTTGATCGGCCGGCGAATTGGTCGGAATCAGATGACTGGAGTAGTGTTAGGTGA 1035 0.5217 MDWVRGDAVGRGSFATVSLVIPTTNPSQFPSLTAVKSSQALTSFWLKNEKHVLDHLGSCPRIIRCFGDDYSFENGVEYYNLFLEYAAAGSLADKVNNCGGRIAEPEVRRYTRSIVEGLNHVHQNGFVHCDIKLQNILVFDDGEIKIADFGLAKEAGERKQRKSECRGTPLFMSPEQVIDGECESPADIWALGCAVVEMVTGKPAWKVEKGSSMWSLMLRIGVGEEIPEIPENLSKEGKDFIEKCFVKDPRKRWSAEMLLKHPFVSDDTVSFKRLHESPRSHFDFPDWVSSATSSLPSSPESQSPWNFDESRLEGFCSPEDRLRQISTVDRPANWSESDDWSSVR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03827 344 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03827 344 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 296 - -
Viun3g03827 344 SUPERFAMILY Protein kinase-like (PK-like) 3 304 IPR011009 -
Viun3g03827 344 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Viun3g03827 344 MobiDBLite consensus disorder prediction 323 344 - -
Viun3g03827 344 Pfam Protein kinase domain 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03827 344 MobiDBLite consensus disorder prediction 293 312 - -
Viun3g03827 344 CDD STKc_MAPKKK 2 264 - -
Viun3g03827 344 Gene3D Transferase(Phosphotransferase) domain 1 2 299 - -
Viun3g03827 344 MobiDBLite consensus disorder prediction 293 308 - -
Viun3g03827 344 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03827 344 MobiDBLite consensus disorder prediction 328 344 - -
Viun3g03827 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Viun3g03827 344 FunFam Mitogen-activated protein kinase kinase kinase 17 2 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03827 Viun-Chr3 45557301 45558921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03827 1 344 MAP Kinase Kinase Kinase AT4G36950 52.286 4.12e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun3g03827 Pkinase 2.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03827 - - gmx:100798607 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03827 3 45557301 45558921 Viun3g03827 3 45557301 45558921 ECH
Viun2g02115 2 29279814 29281230 Viun3g03827 3 45557301 45558921 PCT