Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03826 ATGGATGTGGACATAGTGAAGGCTTCCGCGTGCGACACCACCAACATGGACGTCATGGCAATGATGATGCAGATGGAAAAGTTCTCCGAATTCTGCGACCCTTTTTATTCTACCACCCCACCTTACACAGAAGCCGACATGTTATCGAGTGGGAGCTCCTCAACAAGTGTTTCCACCATTTTCAATAACGGAACTCCACCGACTCTCGTCGATCCATCACCGCCAAATGTCCTCAATTTTTCCAACAATGACAACACCCTTATCCAGCAACCTATGACACCCTCTCTCCACCCCCCACAGCCCAGCACCACCACCTCCTTCCCCTACCCTTCTGAGAAAAAAAACTCTATGGCGGCGATGAGGGAAATGATATTCAGAATAGCGGTGATGCAACCTATTCACATAGACCCCGAATCCATAAAGCCACCGAAGCGAAGGAACGTGAAGATTTCGAAGGATCCGCAGAGCGTGGCGGCGAGGCACCGAAGGGAAAGGATAAGCGAGAAGATAAGGATTCTGCAGAGATTAGTCCCGGGTGGCACCAAGATGGACACGGCTTCGATGCTGGACGAGGCCATTCACTACGTCAAGTTCTTAAAGAAACAGGTGCAGACCCTGGAACAGGCCGGGGCAAATAGACAACACAATCACAATACTGTTGCTGCTGTCGGTTTTCCAATAGGGATGTCTAACTCCAACAACGTTAACTATTCTTCTTTGTTAATCAAGGGTTGCCAACCCTGTCAAGTCTTCGGTTCTACTTCCAAACAATTGCTCAGCTAA 783 0.4904 MDVDIVKASACDTTNMDVMAMMMQMEKFSEFCDPFYSTTPPYTEADMLSSGSSSTSVSTIFNNGTPPTLVDPSPPNVLNFSNNDNTLIQQPMTPSLHPPQPSTTTSFPYPSEKKNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANRQHNHNTVAAVGFPIGMSNSNNVNYSSLLIKGCQPCQVFGSTSKQLLS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03826 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Viun3g03826 260 SMART finulus 156 205 IPR011598 GO:0046983
Viun3g03826 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 209 IPR036638 GO:0046983
Viun3g03826 260 FunFam BHLH transcription factor 153 218 - -
Viun3g03826 260 Gene3D - 149 221 IPR036638 GO:0046983
Viun3g03826 260 Pfam Helix-loop-helix DNA-binding domain 160 199 IPR011598 GO:0046983
Viun3g03826 260 CDD bHLH_AtIND_like 151 207 - -
Viun3g03826 260 Coils Coil 189 209 - -
Viun3g03826 260 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 45 239 IPR045843 GO:0003700|GO:0006355
Viun3g03826 260 MobiDBLite consensus disorder prediction 90 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03826 Viun-Chr3 45527001 45528278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03826 101 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 80.702 3.44e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g03826 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03826 - - gmx:100800816 341.273