Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03812 ATGGTGGTTACTGATGAAAGGAACCGCGATCGTGCGAACAGGAGGGATGTGGTGGAGCTACCACAATATGATCAAGCTGTGACTGTAGCATATTATGGGGAGGAGTTGCATGGTGGCGTACCTCAATCTCACTTCTCCAGAGTCTCTCCTTTAAACATGGATAAACAAAACAAGGTGGTGGAGAGCAAATACAAAATATTGAATAATAGTCCGACCAAGCAAGCAACGTCTGCTGAGGCTCAGAAGTTTTCAAGTTCCATGAAGGCTGCAGTAGAAGGAACATCCTCTCGTGGTGAGGTCATGTCATCAGCAGTTCTTCAAGCAGAGGATGTCCAATCAAATTTGAGACCAGAATTTCCTAGTTTTGTGAAGTCGTTAGTTAGATCACATGTTGCTAGTTGCTTTTGGATGGGCCTTCCTGTGGCCTTCTGCAAAAGACACTTACCGGATAAGGATACAACAATCGTTTTGGAAGATGAATCTGGTAAAGAATACAATACAAAATTTATTGCCTGTAAGATGGGATTGAGTGCTGGATGGAGACAGTTTTCTGCTGTGCACAAATTGCAGGAGGGTGATGCGGTGGTCTTCCAATTAGTTGGACCAACCAAATTTAAGGTTTATATAATAAGAGCTAATAATACGAGGGAACTGGATGGGGCCTTTCTGAATCTTGATAGCTGCACAAAACAACGAAAAATGGGAGGCAAAGATAACATAGATACTGATGTTACATGCAATAGCTCAAAGAGAAAACAGGGCAAAACTGTCCCACTTGATATCCAAAAGAAAAAAAAGGTAAATTTGTCGAGATTGAGACCTAAGGTTATGCCATCAGTAGAACAACAATCTGAAAATGATAGTGAGGAAGCTCTCTCAGAAGTTATGGAGGAGTTTAAAATGCTTGAGTTTGAAGATGTGAGAGGCTTTGAAAATTTTAGCGTCATAGTTGACGGAGTGTCAATAGATGCTGAATTCCCTGACGATGTTAGAAACAAGTACTACAGACTATGTTGTAGTCAGCATGCATTTCTTCATGAGAATCTGATCAAGGGCATGAACTATAAGCTGGTTGCTGGAATTATATCTGAAACTGTGAACATTGCAGATGCCATAAAGGTTAGTATGCTATGCACCCCACGTTTTGAATTTGTTAACTGGGACAAAACATTGCTAGCCTTCGAGCATCTGGGTATGAATGTTGAGTTTCTAAGGATCCGGTTACGCCGGCTTGTTAGCATTGCTTACGAGGAAAATGATGTCTCAGAGGCCAAAAAGTACTTGGCCTCTAGAAACGAGTACAGTCGAGCAGAGGATGAAATAAGGAACATAGAAGAGAAGCTCGAAGAATTGAAGGGAGCATGTAATGGTTTTGGTGCTTATCTTGGGAGTTTGAAGTGCAAAGCTGAAAATTATCACAATAAATTTCGAAGAGAAGTCGAAGCACCTTGGTGA 1455 0.4131 MVVTDERNRDRANRRDVVELPQYDQAVTVAYYGEELHGGVPQSHFSRVSPLNMDKQNKVVESKYKILNNSPTKQATSAEAQKFSSSMKAAVEGTSSRGEVMSSAVLQAEDVQSNLRPEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTIVLEDESGKEYNTKFIACKMGLSAGWRQFSAVHKLQEGDAVVFQLVGPTKFKVYIIRANNTRELDGAFLNLDSCTKQRKMGGKDNIDTDVTCNSSKRKQGKTVPLDIQKKKKVNLSRLRPKVMPSVEQQSENDSEEALSEVMEEFKMLEFEDVRGFENFSVIVDGVSIDAEFPDDVRNKYYRLCCSQHAFLHENLIKGMNYKLVAGIISETVNIADAIKVSMLCTPRFEFVNWDKTLLAFEHLGMNVEFLRIRLRRLVSIAYEENDVSEAKKYLASRNEYSRAEDEIRNIEEKLEELKGACNGFGAYLGSLKCKAENYHNKFRREVEAPW 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03812 484 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 73 215 IPR044837 -
Viun3g03812 484 CDD B3_DNA 120 211 IPR003340 GO:0003677
Viun3g03812 484 ProSiteProfiles B3 DNA-binding domain profile. 122 213 IPR003340 GO:0003677
Viun3g03812 484 Pfam B3 DNA binding domain 122 212 IPR003340 GO:0003677
Viun3g03812 484 Coils Coil 427 454 - -
Viun3g03812 484 Gene3D - 101 215 IPR015300 -
Viun3g03812 484 SMART B3_2 122 213 IPR003340 GO:0003677
Viun3g03812 484 SUPERFAMILY DNA-binding pseudobarrel domain 117 213 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03812 Viun-Chr3 45336207 45339901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03812 104 257 B3 DNA Binding Superfamily AT3G19184 44.231 1.30e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun3g03812 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03812 - - vra:106768002 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03812 3 45336207 45339901 Viun3g03812 3 45336207 45339901 ECH