Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03783 ATGTCGTCGTTGAATTCGCCGTGCGCCGCGTGCAAGCTTCTGCGCCGGAAGTGCACGCAGGAGTGTGTGTTCGCGCCGTACTTTCCGCCGGACAACCCGCAACGGTTCGAGTGCGTGCACCGCGTGTTCGGCGCCAGCAACGTGTCGAAGCTGCTGAACGAGCTCAGCGTGGCGCAGCGCGACGACGCCGTTAAGTCGCTGGCGTATGAGGCGGAGGCGCGATTGCGTGACCCCGTGTATGGCTGTGTGGGATTAATTTCGTTACTACAGCAACGGCTCCGTCAAATACAAATGGAAATTCACAGCGCGAAGAAGGAATTGTCCACTTATGTGAGTACCCAGACTATGCAGATTCTGTTGGAGAATCCTGGGATGGTGCCACCAGCCGAGATTGCCGTGCCTCCTCCTCATCAACCTCTGTTCAATCATGGTGGCAACAACATGGCGCCGCAGCAGATTTTGGTTGGCCATGGCGGTGGCCATACGGTGGTTCGCGACCCTCAGCAGCAGGATTTTCAAGAAGCTCAGCAGATAGTTCTTGCAACTAGGGAGCAGCAACAGATGTTTAGAAACTATGAGCACCAAGTGTTTGGTGGTTTTGAACCTAGTAATGGTGGATTTGGGACCCAAGCAGAATTGTTGTCTCCTTCTTTGGCTCTTGGAAATTTTGGTAATGTTGGAGCTTACCAAATGCAGCAGCTAGGGGAACAACATCCCATTGAGGCACAGTTGCTCCTCTCGCCACAGCAGGGACAGCCCCATCAGCAACAACAGTGTGAAAGTGAGGATGCAAAGAATGTGCTTGATTTTTCAATCAAGTAG 822 0.5316 MSSLNSPCAACKLLRRKCTQECVFAPYFPPDNPQRFECVHRVFGASNVSKLLNELSVAQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQQRLRQIQMEIHSAKKELSTYVSTQTMQILLENPGMVPPAEIAVPPPHQPLFNHGGNNMAPQQILVGHGGGHTVVRDPQQQDFQEAQQIVLATREQQQMFRNYEHQVFGGFEPSNGGFGTQAELLSPSLALGNFGNVGAYQMQQLGEQHPIEAQLLLSPQQGQPHQQQQCESEDAKNVLDFSIK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03783 273 Coils Coil 86 106 - -
Viun3g03783 273 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Viun3g03783 273 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 189 - -
Viun3g03783 273 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03783 Viun-Chr3 45001492 45003215 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03783 1 139 AS2 family AT5G66870 65.714 1.44e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun3g03783 LOB 1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03783 - - vum:124826574 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03783 3 45001492 45003215 Viun3g03783 3 45001492 45003215 ECH
Viun2g02080 2 28994819 28998439 Viun3g03783 3 45001492 45003215 PCT