Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03782 ATGACCCCATGCGGCGCATGCAAGTACCAACGGCGGAGGTGCGGATCGGATTGCCTGCTGGCGCCGTATTTCCCGGCTGAGAGCATTCAGCGGTTCGCGGTCGTGCACCACGTGTTCGGCGGGGGCAACGTGAGTAACATTTTGAAGTCGACGTCGCCGGAGTCGCGGAAGTGGGTGGCGAGGGCGCTGGCGTACCAAGCGGAGGCGCGTGTGAGAGACCCGGTGCACGGGTGCGTGGGGTTGATATGGGAGCAGGAGGCGAGTCTGGGAATCCTGAAAGAGAAGCTGCAGAAAGCGAAAAGGGAACTGGCCCAATACGTGGGCCCATACGTTATGCAAAAGATGATTGCGTGTTTCTCCGATCCGCTTGCGAATATGGTGGACCTTCAGGCTCCTCTCTCTGCCACCGTTGATGATTTTGATCTTTCTTCATGGGATCCTTTTCCGGCTTGGGAGTCTCCTTCTTCCTCGCGCTGCCAGCCACCTCAAGCCGACAGAAAGGGTAAGAGTGTTGCTCCTCCTTCTTGA 528 0.5814 MTPCGACKYQRRRCGSDCLLAPYFPAESIQRFAVVHHVFGGGNVSNILKSTSPESRKWVARALAYQAEARVRDPVHGCVGLIWEQEASLGILKEKLQKAKRELAQYVGPYVMQKMIACFSDPLANMVDLQAPLSATVDDFDLSSWDPFPAWESPSSSRCQPPQADRKGKSVAPPS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03782 175 Coils Coil 82 102 - -
Viun3g03782 175 Pfam Lateral organ boundaries (LOB) domain 3 100 IPR004883 -
Viun3g03782 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 130 - -
Viun3g03782 175 ProSiteProfiles LOB domain profile. 2 103 IPR004883 -
Viun3g03782 175 MobiDBLite consensus disorder prediction 151 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03782 Viun-Chr3 44994896 44996016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03782 2 112 AS2 family AT5G66870 48.649 1.44e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun3g03782 LOB 1.7e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03782 3 44994896 44996016 Viun3g03782 3 44994896 44996016 ECH
Viun3g03782 3 44994896 44996016 Viun2g02080 2 28994819 28998439 PCT