Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03781 ATGGAACCGAGTTTGGATTTGAGCTTGGCCTTTGTCCCGGGAAGAACCGTTCGTCAGATTCTTGGCGAGGTTGCTCGGAGCGAAGATGGGTCTCGGAGAATGGCCACGCTTCAGGATTTTCTCAAAAAGTTGGAAGATGAGAAGAGAAAGATCGAGTCTTTCAAACGTGAACTTCCTCTTTGCATGGTCCTGGTGAACGATGCTATTACTAAATTGAAAGAGGAGATAAACGGAGGTGTGAGAATGCAAGAAGAACCAGTGGTTGAAGAATATATGCCACTTTTGAAAACCAATTCTGAAGGAAGTGAGACTTTAAACATGGGTAAGGAACGCAGTAACATGAAGAATTGGATGAACTCTGTTCGGCTATGGAACGTTGAATCCAAACCGAGGACTGAAGAGGATGATCGATGTGTCCCCGACAATCCAAATCAACCAGAGAATGAGACCAACAAGAGTAGAGGAGCAGCACCAGCATTAAATGGAAACAATTGTGTGTTAAAAACAGTGATGAGTGAAGACAAGGGGGTGTCACAGGTTCCTAGCCTTGGTCTGAGGAGACCAGTGTTTGAATTGAATCATAGAAAAACAGAAAGTGGTAATGAACATGGTTCGTCCTTGATTACAACAAGCTCATTAGAGAGAAAGGGTCAAGCACAACCTCAGCAGAATCCGAGGAAACAAAGGCGATGCTGGTCACCAGAACTTCATAGGCGATTTGTTGATGCCCTTCAACAATTAGGGGGACCACAAGTGGCCACTCCAAAGCAGATTAGAGAACTGATGCAGGTGGTAGGCCTCACCAATGATGAAGTGAAAAGCCATTTGCAGAAGTACAGACTTCATTTTAGAAGACCTCAAGTTTCTTCGGTGGAGCTGGCTAATGGTGGATTATGTCTTGTGGTAGAAGAAAAATGTGGAGATAATAATAAATCAAAAGGGAACTTATCACAATCTGGGTCTCCACAAGGTCCTCTTTTCTTAGGAGGGTCTGGACGCAACAGCATGGAAACAGAAGAAGATGAACAATCAGATTGCCACAATTGGAAAAGTGGCTTTCACCACCAACCAGAAGCTGAACCTCTATGA 1089 0.4408 MEPSLDLSLAFVPGRTVRQILGEVARSEDGSRRMATLQDFLKKLEDEKRKIESFKRELPLCMVLVNDAITKLKEEINGGVRMQEEPVVEEYMPLLKTNSEGSETLNMGKERSNMKNWMNSVRLWNVESKPRTEEDDRCVPDNPNQPENETNKSRGAAPALNGNNCVLKTVMSEDKGVSQVPSLGLRRPVFELNHRKTESGNEHGSSLITTSSLERKGQAQPQQNPRKQRRCWSPELHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQKYRLHFRRPQVSSVELANGGLCLVVEEKCGDNNKSKGNLSQSGSPQGPLFLGGSGRNSMETEEDEQSDCHNWKSGFHHQPEAEPL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03781 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 284 IPR017930 -
Viun3g03781 362 MobiDBLite consensus disorder prediction 311 325 - -
Viun3g03781 362 Coils Coil 37 57 - -
Viun3g03781 362 Pfam Myb-like DNA-binding domain 229 280 IPR001005 -
Viun3g03781 362 MobiDBLite consensus disorder prediction 128 161 - -
Viun3g03781 362 MobiDBLite consensus disorder prediction 202 229 - -
Viun3g03781 362 MobiDBLite consensus disorder prediction 310 362 - -
Viun3g03781 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 350 IPR044787 GO:0003700|GO:0006355
Viun3g03781 362 MobiDBLite consensus disorder prediction 143 158 - -
Viun3g03781 362 SUPERFAMILY Homeodomain-like 225 285 IPR009057 -
Viun3g03781 362 MobiDBLite consensus disorder prediction 128 142 - -
Viun3g03781 362 MobiDBLite consensus disorder prediction 194 231 - -
Viun3g03781 362 MobiDBLite consensus disorder prediction 335 362 - -
Viun3g03781 362 FunFam Myb family transcription factor 226 284 - -
Viun3g03781 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 282 IPR006447 GO:0003677
Viun3g03781 362 Gene3D - 226 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03781 Viun-Chr3 44982511 44984940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03781 1 302 G2-like Transcription Factor Family AT2G03500 37.538 8.99e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun3g03781 Myb_DNA-binding 8.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03781 - - gmx:100794220 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03781 3 44982511 44984940 Viun3g03781 3 44982511 44984940 ECH
Viun3g03781 3 44982511 44984940 Viun2g02076 2 28976695 28978986 PCT