Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03778 ATGGATCGGGCGGCGTTGACGGTCGGACCGGGCATGGACATGCCGATCATGCACGACAGTGACCGTTACGATCTGGTCCGTGACATCGGGTCCGGAAATTTCGGCGTGGCCAGGCTGATGCAGGATAAACAGACCAAGGAACTCGTTGCCGTCAAGTACATCGAGAGGGGCGATAAGATTGATGAAAATGTGAAGAGGGAAATTATTAACCATAGGTCTTTGAGACATCCCAATATTGTTAGGTTTAAAGAGGTTATTTTAACACCTACTCATCTGGCGATTGTAATGGAATATGCCTCTGGAGGCGAGCTCTTTGAGAGAATCTGCAATGCTGGGCGTTTTACTGAGGACGAGGCTCGATTCTTCTTTCAGCAACTCATATCCGGAGTTAGTTATTGCCATGCTATGCAAGTATGTCATCGGGACTTAAAGCTGGAAAACACTTTGCTGGATGGAAGCCCGGCACCTCGTTTGAAGATATGTGATTTTGGGTACTCCAAGTCTTCAGTGCTACATTCACAACCGAAGTCAACTGTGGGAACTCCTGCATATATTGCTCCAGAAGTATTGCTGAAAAAAGAGTATGATGGAAAGCTTGCAGATGTCTGGTCATGTGGAGTGACCCTATATGTGATGCTAGTGGGAGCATATCCTTTTGAAGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAGAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCCCTGCGGACCTAATGGATGAGAGGATAATGAGTAATCAATTTGAAGAGCCAGACCAACCCATGCAGAGCGTTGATACGATCATGCAGATAATTTCAGAAGCTACGGTACCAGCAGCTGGGACCTATACTTTTGACCAGTTAATGGGGGAGCAAATTTATGACTTAGAATCTGAATCTGATGCTGAATCTGAGCTTGATATAGATAGCAGTGGGGAGATAGTGTATGCCATATAG 984 0.4522 MDRAALTVGPGMDMPIMHDSDRYDLVRDIGSGNFGVARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFTEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKLADVWSCGVTLYVMLVGAYPFEDPNEPKDFRKTIQRITMSEIWNHEWFLKNLPADLMDERIMSNQFEEPDQPMQSVDTIMQIISEATVPAAGTYTFDQLMGEQIYDLESESDAESELDIDSSGEIVYAI 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03778 327 Pfam Protein kinase domain 23 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03778 327 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Viun3g03778 327 Gene3D Transferase(Phosphotransferase) domain 1 99 262 - -
Viun3g03778 327 PANTHER SERINE/THREONINE KINASE 22 272 - -
Viun3g03778 327 SMART serkin_6 23 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03778 327 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Viun3g03778 327 ProSiteProfiles Protein kinase domain profile. 23 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03778 327 FunFam Serine/threonine-protein kinase SRK2A 99 237 - -
Viun3g03778 327 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Viun3g03778 327 SUPERFAMILY Protein kinase-like (PK-like) 21 282 IPR011009 -
Viun3g03778 327 FunFam Serine/threonine-protein kinase SRK2E 14 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03778 Viun-Chr3 44958526 44963794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03778 22 256 CBL-interacting serine-threonine protein kinases AT4G24400 41.697 1.02e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Viun3g03778 Pkinase 2.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03778 K14498 - gmx:100806949 623.239