Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03747 ATGTTCCACCACAACATAAACTTCGCACTGCTTCTCTCCATCTTCGTTTTCTGTTCAACGATCGCCGCAACTGCCACCAACTGCAGACCCAGTTGCGGACAACATTCCCTGCAATACCCTTTTGGCTTCTGTTCTGACAGCAAAGTCAAACTAAACTGCAGCAACGACGGTACGAAAGTCAAAATCGGCGAGTTCGAGGTTCAGAATATAACCTCTGATGGCATATTCGTGAGTCTTCCGGTGAAGTGCAACCGCAGCATGGGAATCGTAGACCCTCTTTTCGGTGTTAACTTTTCTCCTACGTTCAACAATAGCTTTCTGTTGCAGGGTTGCAAGTCCAAATTCAATAGCTGCGATATTACCCCGTCGAGTTTCGTTGGCGACCACAACCCGGTGGAGGGGTGTGACCGGAAAAACGAAAGTGAAGATTTTATTTGCTTCAAGCAGTTGCCGCGTAATAGTTCGCGGCGTGAAGATGTGCTCCAGCAGAGTGATTTGATGGGAATTGGGTGTAACTTCTTGTTTTCTGCTATTGCTTATGATAAGAGTAAAGGAAAAGAGCTTTTGCTCCAATTACAGATGCTTGAGTTGGGGTGGTGGCTTAAAGGGCCGTGTAACTGCTCCAACAATGCTTCCTGCACGGTGGTCAAGCTTGGCACAAAAGATCAAGGCTACCGGTGCCGGTGCCATGAAGGTTTCGTGGGCGATGGTTTCAAAGACGGCGATGGTTGCAGGAGTATTCGTCAATGCAAAGGTTCAACACTATGGCCTGGCGGATGTAGAAAAGCAATCAAAATCGTTGTCCTTGTTGGAGTGGTCATAATTGCGGCTATCCTGGTGGTTGCTCTGTCTCTTCTATGTTACTTTACTAGGCGTCGTTCCTCTTGGCTGAGAAAACAAGTTACAGTAAAGCGCTTATTACGAGAAGCTGCAGGCGACTCTACTGTTCCTCTATATCCCTACAAAGAAATAGAAAGAGCCACAAGTTTTTTCGATGAAAAACATAGGCTGGGAACTGGGGCATTTGGCACAGTTTATGCAGGACACCTTCACAACGATGAGTGCGTTGCTATAAAAAAGATTAAGTATAGAGACACCAATAGTGTTGACCAAGTCATAAACGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAACTTAGTGCGCCTCCTAGGTTGTTGCATAGAAGGGGGAGAACAGATACTTGTGTATGAGTATATGCCCAATGGAACACTATCTGAACATTTGCAAAGGGAAAGGGGTGGAATACTTCCATGGACAATAAGACTCACCATTGCTACAGAAACTGCCAATGCCATAGCATATCTACATTCTGCGATTAACCCTCCAATATATCACAGAGACATAAAATCCAGCAACATACTCTTGGACTACAATTTTCAATCAAAAGTGGCAGATTTTGGGCTTTCTAGGCTTGGCATGTCAGAAACATCACATATCTCAACCGCCCCACAAGGGACCCCGGGCTATGTTGATCCCCAATATCACCAGAACTTTCACCTTTCTGATAAAAGTGATGTCTACAGTTTTGGAGTGGTTTTGGTAGAGATAATAAGTGCCATGAAAGTGGTTGATTTTTCGCGACCAAAAAGTGAAACCAATTTGGCTGCACTTGCAGTTGAAAGGATCAGGAGGGGTTGTCTCGATGATATCATTGATCCATTCCTTGAGCCACATAGGGATGCTTGGACACTCTATTCTGTTCACAAGGTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACAATGATTGAAGTGGCTGAGGAGCTTGAAGTTATCAGACGCAGTGAGTGGGAAACTTTGGAGGAAACCATATGCACAGCTTCATCGGTTGGGTCCGTGTGTTCATCGCCTCGAATAGGAAGAGAGAATTCATTGGTTGGTGCTAGTTTTGAGAGAGTTGGAGGACAAGGGAGTGAGACATTGATTGTTCCACCCAAGACTGAAATGTTTTTGCAATCAATGACGGAAGTGAAGGACAATTCTCCTGTATCTGTGCATGATGCTTGGCTCAGTGGAACTAGCTCACCTTCAACAAATTGCTAG 2085 0.4513 MFHHNINFALLLSIFVFCSTIAATATNCRPSCGQHSLQYPFGFCSDSKVKLNCSNDGTKVKIGEFEVQNITSDGIFVSLPVKCNRSMGIVDPLFGVNFSPTFNNSFLLQGCKSKFNSCDITPSSFVGDHNPVEGCDRKNESEDFICFKQLPRNSSRREDVLQQSDLMGIGCNFLFSAIAYDKSKGKELLLQLQMLELGWWLKGPCNCSNNASCTVVKLGTKDQGYRCRCHEGFVGDGFKDGDGCRSIRQCKGSTLWPGGCRKAIKIVVLVGVVIIAAILVVALSLLCYFTRRRSSWLRKQVTVKRLLREAAGDSTVPLYPYKEIERATSFFDEKHRLGTGAFGTVYAGHLHNDECVAIKKIKYRDTNSVDQVINEIKLLSSVSHPNLVRLLGCCIEGGEQILVYEYMPNGTLSEHLQRERGGILPWTIRLTIATETANAIAYLHSAINPPIYHRDIKSSNILLDYNFQSKVADFGLSRLGMSETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIISAMKVVDFSRPKSETNLAALAVERIRRGCLDDIIDPFLEPHRDAWTLYSVHKVAELAFRCLAFHSDMRPTMIEVAEELEVIRRSEWETLEETICTASSVGSVCSSPRIGRENSLVGASFERVGGQGSETLIVPPKTEMFLQSMTEVKDNSPVSVHDAWLSGTSSPSTNC 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03747 694 SMART serkin_6 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03747 694 ProSiteProfiles Protein kinase domain profile. 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03747 694 FunFam Wall-associated receptor kinase-like 14 298 406 - -
Viun3g03747 694 Gene3D Transferase(Phosphotransferase) domain 1 407 624 - -
Viun3g03747 694 CDD STKc_IRAK 337 604 - -
Viun3g03747 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Viun3g03747 694 SUPERFAMILY Protein kinase-like (PK-like) 314 605 IPR011009 -
Viun3g03747 694 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 684 IPR044652 GO:0004672
Viun3g03747 694 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Viun3g03747 694 Gene3D Phosphorylase Kinase; domain 1 292 406 - -
Viun3g03747 694 Gene3D Laminin 205 239 - -
Viun3g03747 694 FunFam Wall-associated receptor kinase-like 20 407 616 - -
Viun3g03747 694 Pfam Protein kinase domain 332 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03747 Viun-Chr3 44506618 44510872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03747 1 693 Receptor kinase-like Gene Family AT2G23450 52.632 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Viun3g03747 Pkinase 3.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03747 - - gmx:100810861 1090.49