Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03736 ATGAACAAATCTCTGGCGTTTATTGCTACAGCCATTTCGACAAGGTTCCGCGTTCCTCTTCCTCTTCCTCAAATTCAATACCGATTCAACTGTTCTTCACCCTCTCATCCTTCATCCAACAAGCTCTTTGTTGGAGGGTTGTCATGGTCAGTGGACGAGAAGTCGCTCAAAGACGCTTTCTCTTCCTTCGGAGACGTCACTGAAGTGAGGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGTTTTGGATTTGTCATTTTTTCAAATGAAGATGATGCCAAATATGCAAAGGAAGCAATGGATGGAAAGGCATTGTTGGGCAGACCATTGAGGATAAGTATTGCACTTGAGAAGGCCCGAGGTGTACCTGTTGTAGTTCCTCGACTTTCAGATATTGGACATTTGAACAGGCGCTAA 420 0.4429 MNKSLAFIATAISTRFRVPLPLPQIQYRFNCSSPSHPSSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDDAKYAKEAMDGKALLGRPLRISIALEKARGVPVVVPRLSDIGHLNRR 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03736 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Viun3g03736 139 Gene3D - 26 122 IPR012677 -
Viun3g03736 139 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 16 120 - -
Viun3g03736 139 SUPERFAMILY RNA-binding domain, RBD 20 122 IPR035979 GO:0003676
Viun3g03736 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Viun3g03736 139 CDD RRM2_NsCP33_like 41 116 - -
Viun3g03736 139 SMART rrm1_1 41 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03736 Viun-Chr3 44365884 44371391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03736 42 133 Eukaryotic Initiation Factors Gene Family AT1G22760 30.526 3.61e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03736 - - gmx:100810104 218.009