Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03721 ATGGGTTGGTTTACTAAATTGCTCAAGGGATCCAACCGTAAATATTCAGGAGGAAGATATCATGGGAAATATGGAGACGACAGATATTCAGACAATCATGATAATTCAGCGGATGATTTGACGGAAATTGAGAAAGAAGAAATTGATCGGGCGATAGCACTCTCTCTTTCAGAGGCAGATCCGAAAGGGAAAAAAGTTATTGAGGATGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTGATGATGATGATGATGATGAAGACAGATGTGTTGGGGAAGTTCAGAAAGATGAAGATGACCACCATGCTCAAATTCAACAGGATGAAGACAAAAATCTTGATGAATTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGAAACTGATTCTTTATTTCAACCTCTTGCAAACTTATTCCCACCTGTATACAGAACCTGTGCTGGTTGCAATGCCGAGATTGGCAGTGGAAGATTTTTGAGTTGCATGGGAGGTTTTTGGCATCCCGAATGTTTCTGTTGCCATGCTTGCGAACTTCCAATCACTGATTATGAGTTTTCAATGTCTGGAAATCGCCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCTAAATGTGATGTTTGCAAAAGCTTTATCCCACCAAACTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGCCCATCGCATGAGCGTGATGGTACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATGCCAAATATCTGTTGCTTGATGATGGCCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCTCTTTATGTTGAGATACAAGAATTTTATGAAGGTTTACATATGAAGATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAGGCACTTAACGAAGCCATGGAGGGAGAGAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCTGAAGAGCAAACTATTCCCACTATTTTGAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACAGAGCCTTTTAGACTGATTCGTCGATGCGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCCAGGCTATTGACTGGATCAATTCTGGCTCACGAAATGATGCATGCGTGGCTTAGACTTAAAGGCTATGGTAATCTGAAGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATCTATTCCAGCTCTGGGAATGAAGGCGCAGTATCATCATCATCTTCTTCTTCTTCCTCATCCTCCTCCTCACCTTCGTCCTCTTCATCATCTAAGAAGGGTAAACGTTCTGAATTTGAGAAGAAACTTGGTGAATACTTCAAACACCAGATTGAGTCAGATAGTTCATCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAAGCAGTGCTCAAGTATGGCCTTAAAAGGACCCTTGACCATATCCGAATGACTGGTAGTTTTCCTTATTGA 1602 0.4195 MGWFTKLLKGSNRKYSGGRYHGKYGDDRYSDNHDNSADDLTEIEKEEIDRAIALSLSEADPKGKKVIEDDSESEDDELCPLDDDDDDEDRCVGEVQKDEDDHHAQIQQDEDKNLDEFQLEEDEQLARAIQESLSISSPPRSETDSLFQPLANLFPPVYRTCAGCNAEIGSGRFLSCMGGFWHPECFCCHACELPITDYEFSMSGNRRYHKSCYKELHHPKCDVCKSFIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPRIGAGYQLIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLKPEVEEGICQVLAHMWLDSEIYSSSGNEGAVSSSSSSSSSSSSSPSSSSSSKKGKRSEFEKKLGEYFKHQIESDSSSAYGDGFREGNQAVLKYGLKRTLDHIRMTGSFPY 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03721 533 SMART uim 120 139 IPR003903 -
Viun3g03721 533 SMART uim 43 62 IPR003903 -
Viun3g03721 533 PANTHER PROTEIN DA1-RELATED 2 3 533 IPR045218 -
Viun3g03721 533 MobiDBLite consensus disorder prediction 70 87 - -
Viun3g03721 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 157 186 - -
Viun3g03721 533 CDD LIM_DA1 161 213 - -
Viun3g03721 533 SMART lim_4 160 212 IPR001781 -
Viun3g03721 533 FunFam Protein DA1-related 1 155 214 - -
Viun3g03721 533 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 120 139 IPR003903 -
Viun3g03721 533 MobiDBLite consensus disorder prediction 19 38 - -
Viun3g03721 533 MobiDBLite consensus disorder prediction 1 38 - -
Viun3g03721 533 Pfam Protein DA1 310 528 IPR022087 -
Viun3g03721 533 MobiDBLite consensus disorder prediction 54 87 - -
Viun3g03721 533 Gene3D Cysteine Rich Protein 157 218 - -
Viun3g03721 533 MobiDBLite consensus disorder prediction 451 480 - -
Viun3g03721 533 MobiDBLite consensus disorder prediction 451 475 - -
Viun3g03721 533 ProSiteProfiles LIM domain profile. 159 219 IPR001781 -
Viun3g03721 533 Pfam LIM domain 161 215 IPR001781 -
Viun3g03721 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 245 - -
Viun3g03721 533 ProSitePatterns LIM zinc-binding domain signature. 161 195 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03721 Viun-Chr3 44237748 44242171 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun3g03721 DA1-like 5.3e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03721 - - gmx:100806605 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03721 3 44237748 44242171 Viun3g03721 3 44237748 44242171 ECH
Viun3g03721 3 44237748 44242171 Viun2g02027 2 28663713 28670164 ECH
Viun2g02027 2 28663713 28670164 Viun3g03721 3 44237748 44242171 PCT