Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03710 ATGAATCATCAACTTGAAGACCAAATGATGCTCTTCACTCACCAATATCTTGGTGCATTCACTGAAGTAACTCCTCCTCAACAAGGCAAAGAAACCAAGCCAAGACGTAAGAGAAACAAAAATGGTGCTGTGGCCACCACCAAGAAGAGAAAGCTCACTGCCGAACAAGTTAGTCTTCTCGAGAAAAATTTCTGCAGTGAACACAAACTTGAATCTGAAAGGAAGGACCAACTCGCATTTGAGCTTGGTATGGATCCTCGACAAGTTGCGGTATGGTTTCAAAATCGACGTTTTCGTTGGAAGACCAAAAAGTTGGAGGAAGAGTACTCCAATCTTAAGAATGTTCATGAAACCACCATGCTTCAGAAGTGCCAACTTGAGAATCGGGTATTGAAGTTAGAGGAGCAGCTTTCGGAAGCAAAGAAGGAGATTCAGCAGTTACAAGAGCGTGGTGAAAGAGCCGCAAGCAAACATTTGCTGGAAGATGTGAACCCACCATTTCCTGAAGAGTTTAGGGTTGAAGAATATGATTATGGTGATGTTTTCTACATTCCGGAGACTCATTACGTCAATGGAATGGGGTGGATTAATCTCTACATGTGA 603 0.4262 MNHQLEDQMMLFTHQYLGAFTEVTPPQQGKETKPRRKRNKNGAVATTKKRKLTAEQVSLLEKNFCSEHKLESERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNVHETTMLQKCQLENRVLKLEEQLSEAKKEIQQLQERGERAASKHLLEDVNPPFPEEFRVEEYDYGDVFYIPETHYVNGMGWINLYM 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03710 200 CDD homeodomain 48 104 IPR001356 GO:0003677
Viun3g03710 200 ProSiteProfiles 'Homeobox' domain profile. 43 103 IPR001356 GO:0003677
Viun3g03710 200 SUPERFAMILY Homeodomain-like 47 111 IPR009057 -
Viun3g03710 200 SMART HOX_1 46 107 IPR001356 GO:0003677
Viun3g03710 200 Pfam Homeodomain 48 101 IPR001356 GO:0003677
Viun3g03710 200 Gene3D - 39 111 - -
Viun3g03710 200 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 31 152 IPR045224 GO:0003700
Viun3g03710 200 Coils Coil 123 157 - -
Viun3g03710 200 MobiDBLite consensus disorder prediction 22 48 - -
Viun3g03710 200 FunFam homeobox-leucine zipper protein ATHB-40 42 111 - -
Viun3g03710 200 ProSitePatterns 'Homeobox' domain signature. 78 101 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03710 Viun-Chr3 44041942 44043620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03710 1 200 Homeobox Transcription Factor Family AT4G36740 46.789 4.04e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Viun3g03710 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03710 K09338 - gmx:100803948 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03710 3 44041942 44043620 Viun3g03710 3 44041942 44043620 ECH
Viun2g01999 2 28470439 28472384 Viun3g03710 3 44041942 44043620 PCT