Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03709 ATGGCGGAAGAACGCCGATTCGTCTCTCTCTGCGACCGTGATCTCATCCTCCATCTCTCACTATCAAATTTTGGTTCCGCTTACGCTGAAAGTGACCATGATGCTATCGATGAAGATGATGATTTTGTCTTCGACATAGATCCTACCGTGTTAGTGGATACTCGTAAACTTATAATTGATGAACCGATCGCAGAAGGCTTGCATTCAATAGTCTACAAAGGATGGTATGAATTCAATCCTGTATCTGTCAAGGTTATGCTTCCGATGCAAACATCAAATGTTACTTCTTCTTGTAAAGCAAAATTTCAGCGGGAGGTTAACTTGATATCCAAAATCAAACATAAAAATATAATAAAGTTTATTGGCGCCTCTGTGGAGCCAACAATGATGATAATTACAGAATTTTTGGAAGGTTGTTCGCTAAATAAATACCTAGAGAGCATTTATCCAAATGCTCTTAGTTTAGAGCAATCCATAAGTTTTGCTTTGGATATTTCTCAAGCCATGGAGTATCTGCATGCAAATGGCATCATTCACCGCGATCTAAAACCTGGTAATTTGCTTCTTGCCAAAGACAAAATGCAAATTTTACTTACAAACTTTGAGACAGCTAGAGAGGAGATATCTGGTGAGATGACTTCTGAGGCTGGTACATATCGATACATGGCTCCTGAGTTATTCAGCAAGGATCCACTTTCTAAAGGAGCCAAGAAATGCTATGACCATAGGGTAGATGTTCATAGCTTTGCTATGGTTCTATGGGCAATAATTAAAAACCAGACTCCATTTAAAGGAAGGAGTGACTTGTTAGCAGCATATGCTACTGCAAAAAAGATGAGGCCTAGTTTGGAGGGTTTTCCAGAAGTTGTGGTTCCATTACTGCAGTCTTGTTGGGCAGAAGACCCAAAGCTACGACCTGAATTCTCAGAGATTACCCAATTCCTTGAAAAACTTCTCCATAACTATCACTCAGCTGAGGAAAAAGTGTGTCCAACAACAAGTGTGCAGGAAATTTTCCCCTATGTTGAAGACAACACAGAACATGAAAATGAGGCTCAGAGTCTGAATACCAGTGTCTGCTTAGAGGGACAATCTCAGGTCATAACACAAAACTCTAGTCCAGTAGTCATAGCCCAAACCGAGCATAAAAGGACTCTTAAGAAGGGCAAGGGTTTATGGTTATGCTTTCAAAAATGCTTTCACATTTGTTAA 1212 0.3985 MAEERRFVSLCDRDLILHLSLSNFGSAYAESDHDAIDEDDDFVFDIDPTVLVDTRKLIIDEPIAEGLHSIVYKGWYEFNPVSVKVMLPMQTSNVTSSCKAKFQREVNLISKIKHKNIIKFIGASVEPTMMIITEFLEGCSLNKYLESIYPNALSLEQSISFALDISQAMEYLHANGIIHRDLKPGNLLLAKDKMQILLTNFETAREEISGEMTSEAGTYRYMAPELFSKDPLSKGAKKCYDHRVDVHSFAMVLWAIIKNQTPFKGRSDLLAAYATAKKMRPSLEGFPEVVVPLLQSCWAEDPKLRPEFSEITQFLEKLLHNYHSAEEKVCPTTSVQEIFPYVEDNTEHENEAQSLNTSVCLEGQSQVITQNSSPVVIAQTEHKRTLKKGKGLWLCFQKCFHIC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03709 403 PRINTS Tyrosine kinase catalytic domain signature 171 189 IPR001245 GO:0004672|GO:0006468
Viun3g03709 403 PRINTS Tyrosine kinase catalytic domain signature 133 146 IPR001245 GO:0004672|GO:0006468
Viun3g03709 403 PRINTS Tyrosine kinase catalytic domain signature 286 308 IPR001245 GO:0004672|GO:0006468
Viun3g03709 403 SUPERFAMILY Protein kinase-like (PK-like) 50 340 IPR011009 -
Viun3g03709 403 Gene3D Transferase(Phosphotransferase) domain 1 138 361 - -
Viun3g03709 403 Pfam Protein tyrosine and serine/threonine kinase 59 315 IPR001245 GO:0004672|GO:0006468
Viun3g03709 403 Gene3D Phosphorylase Kinase; domain 1 47 137 - -
Viun3g03709 403 ProSiteProfiles Protein kinase domain profile. 57 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03709 403 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03709 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Viun3g03709 403 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 57 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03709 Viun-Chr3 44004765 44010322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03709 39 324 MAP Kinase Kinase Kinase AT5G66710 54.007 1.43e-107 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Viun3g03709 PK_Tyr_Ser-Thr 5.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03709 - K04427 pvu:PHAVU_003G251900g 625.55