Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03705 ATGAGAGTTCCCTCATCCCAACAGCCCAACACCCATTCTCCCAACCCAAACCTCCTCCTCCACACCCTCCCCACCGCCGCCACCACCACCACCAACCCCACCTTCACCTACGAACCCACCTCCGTCCTCGACCTCTGCCGCAGCCCCAGTCCCGAAAAGAAACCAACTGTCCCCAAGCCAGAATCCCAACACAACACCACCGCCACCACAACCAATACCAACAACACCCTAGACCTGGACGATCATGTCTTGCCAAATTCCGATTGGTGGGAGTCCATCATGAAGGACTTAGCCTTACCCGAAGATTCTCCCACAACCCTCTCCAAGCCTAACAACATCAACCCATGCATCCCTGACTTTCCACCTTCTCATGACCCACCCTTTGATCACCCCCCAGACTTCACCTCGCTTTCAGAAATTTACAACCAAAACCTCCCCTACAACTACACCACCACCAACGCTTTGGACCATTCCTTCCACGACCTCAACCACCACCACCACAACCCCACCAACAACGTCAACAACTGGGACTTCATCGAAGAGCTTATCCGCGCCGCCGATTGCTTCGACAGCAGTCACTTCCAACTCGCTCAGGCCATACTCGAACGCCTCAACAACCGCCTCATTCGCTCACCCATGGCCAAGCCGCTCCACCGAGCCGCCTTTCACTTCAAAGACGCTCTCCATTCCATTCTCTCCGGTCCCAACCGTGCCGCTTCCAACCGCCTCTCCTCCATGGCCGAGATTGTTCAAACCATCAAAACATTCAAGGCCTTCTCGGGAATCTCTCCCATCCCAATGTTCTCTATCTTCACCACCAACCAGGCCTTGCTAGAAACCCTAAACGGATCCTCCTTCGTGCACGTCATCGATTTCGAAATCGGGCTCGGGATCCAATACGCCTCGCTCATGAAAGAGATCGCGGAGAAGGCCGCCGGCGCTACGCTGCTCCTCCGGATCACGGCCGTCGTGCCGGAGGATTACGCCGTGGAAAGCCGCCTCGTCCGCGAGAATCTCAACCAATTTGCGCATGACCTCGGGATCCGCGTTCAGGTGGACTTCGTCCCGCTGAGGACCTTCGAGACGGTGTCATTCAAGGCGGTAAGGTTTGTCGACGGCGAGAAGATCGCGGTGCTGCTGTCGCCGGCGATATTTTGCCGCCTCGGTTCCGGCGGCGCCAGCGTCGGCGCGTTCCTCGCCGACGTGAGGAGGATGGCGCCCGGAGTGGTGGTGTTCGTGGACGGCGAGGGGTGGACGGAGGCTACCGCTGCGGCGTCTTTTCGGCGCGGCGTGGTGAACAGCTTGGAATTTTACTCGATGATGCTGGACTCGCTGGATGCGTCTGTGGCGGCGGGGGGAGGCGGAGAGTGGGTGAGGAGGATCGAGATGCTTCTGCTGCGGCCGAAGATCTTCGCAGCGGTGGAAAGCGCAAGGAAGAGGTCACCACCGTGGAGGGAGGCATTTTACGGCGCGGGAATGAGGCCGGTGCAGCTGAGTCAGTTCGCCGATTATCAAGCGGAGTGTTTGCTGGCGAAGGTGCAAATCAGAGGGTTCCACGTGGAAAAACGGCATGCGGAATTGGTGCTCTGCTGGCACGAACGAGCCATGGTTGCCACGTCAGCGTGGCGGTGCTAG 1635 0.5847 MRVPSSQQPNTHSPNPNLLLHTLPTAATTTTNPTFTYEPTSVLDLCRSPSPEKKPTVPKPESQHNTTATTTNTNNTLDLDDHVLPNSDWWESIMKDLALPEDSPTTLSKPNNINPCIPDFPPSHDPPFDHPPDFTSLSEIYNQNLPYNYTTTNALDHSFHDLNHHHHNPTNNVNNWDFIEELIRAADCFDSSHFQLAQAILERLNNRLIRSPMAKPLHRAAFHFKDALHSILSGPNRAASNRLSSMAEIVQTIKTFKAFSGISPIPMFSIFTTNQALLETLNGSSFVHVIDFEIGLGIQYASLMKEIAEKAAGATLLLRITAVVPEDYAVESRLVRENLNQFAHDLGIRVQVDFVPLRTFETVSFKAVRFVDGEKIAVLLSPAIFCRLGSGGASVGAFLADVRRMAPGVVVFVDGEGWTEATAAASFRRGVVNSLEFYSMMLDSLDASVAAGGGGEWVRRIEMLLLRPKIFAAVESARKRSPPWREAFYGAGMRPVQLSQFADYQAECLLAKVQIRGFHVEKRHAELVLCWHERAMVATSAWRC 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03705 544 Pfam GRAS domain family 179 543 IPR005202 -
Viun3g03705 544 ProSiteProfiles GRAS family profile. 169 543 IPR005202 -
Viun3g03705 544 MobiDBLite consensus disorder prediction 42 80 - -
Viun3g03705 544 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g03705 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 165 538 IPR005202 -
Viun3g03705 544 MobiDBLite consensus disorder prediction 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03705 Viun-Chr3 43962947 43965119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03705 77 543 GRAS Transcription Factor Family AT4G36710 51.423 2.21e-156 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun3g03705 GRAS 7e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03705 - - gmx:100785004 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03705 3 43962947 43965119 Viun3g03705 3 43962947 43965119 ECH
Viun2g01997 2 28454570 28456717 Viun3g03705 3 43962947 43965119 PCT