Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03698 ATGACGGTTGATTTGGACAACGTTTCCACAGCGTCAGGGGAAGCAAGCATGTCTTCCTCTGCCAATCAAACAAAACCTGCTCCCAAGAGAAAACGAAACCTCCCTGGCATGCCAGATCCTGAGGCAGAGGTGATTGCTCTGTCGCCGAAGACGCTGTTGGCGACGAACCGGTTCGTGTGCGAGATATGCAACAAAGGGTTTCAGAGAGACCAGAATCTGCAGCTTCATCGGAGAGGTCACAACTTGCCGTGGAAGCTGAGGCAGAGGTCCACCAAGGAGGTAAGGAAGAGAGTGTACGTGTGTCCCGAACCCGCGTGCGTGCACCACGACCCTTCTAGAGCACTGGGGGACTTGACGGGGATTAAGAAGCACTTCTGCAGGAAGCACGGTGAGAAGAAGTGGAAATGCGACAAATGCTCCAAGAAATACGCCGTTCAGTCGGATTGGAAAGCGCACTCCAAAGTATGCGGCAATAGAGAGTATAAGTGCGATTGCGGAACCGTTTTCTCCAGGAGGGATAGCTTCATTACGCATAGAGCGTTTTGCGATGCGTTGGCGAAGGAGAGTACGAGATCTCACACTGTTGTTACCAAGGCTAATGAGGAGAATGATTCAACAGTTTTAACCGACTCCCCGCCGCCGGAGGTGGCGGCGGCTGCAGCCACCACACCTTCGCAGTCAAACAGTGTCATATCTTCTGGTGTGCAGACGCAGAACCCAGAGTTACCGGAATGTAATCCCCCAGAAGTCATTGAGGAGCAACAAGCTACTACTGCTATAAGTGGGAGCTGTGGCAGCAACAACAACAGTACCAATTGCTCAGCAAGCAATGGCGGTGCTACTAATAATAGTAATAGTAGTAGTGTGTTTGCAAGTTTGTTTGCTTCTTCAACATCATCTGGGACTCTACAATCTCAAACACCAGCATTCAGTAACTTAGTTAGAGCCATGGGTCCTCCAGATCACCATGCAGATATCACAGTTCCCTCTTCATCTGAGGCCGTATCTCTTTGCCTCTCCACCAGTAATGCCTCACCAATATTCGCAGCAGGAGGGCAAGAGCACCGGCAGTATGCGTCGTCGCCTCCACAACCGGCCATGTCAGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCTGCAGCCACAAACGCCTCTCTGCTTCGCGGGTTTGGCATTGTGTCATCTTCATCTTCAGCTTCAACTCCATCAGGGCAGCAAAATGGCCTGCAATGGGGTCAGCCTCAGTTAGAATCTGAGAGTGTTTCGGTTCCTGCAGGGCTTGGACTTAGTCTTCCGTGTGATGGTGATTCTGGACTCAAGGAATTGATGACGGGAACACCCTCCATGTTTGGTCCTAAACACACAACTCTTGATTTTCTGGGATTGGGGATGGCTGCTGGTGGAGGCTTATCTGCACTCATCACATCTATTGGTGGTGGTTTGGATGTTGCTGCAGCAACAACCTTCGGTAATGGGGAATTTTCTGGCAAAGATATTGGAAGGAGGAGCTCTTGA 1521 0.5089 MTVDLDNVSTASGEASMSSSANQTKPAPKRKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKRVYVCPEPACVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGNREYKCDCGTVFSRRDSFITHRAFCDALAKESTRSHTVVTKANEENDSTVLTDSPPPEVAAAAATTPSQSNSVISSGVQTQNPELPECNPPEVIEEQQATTAISGSCGSNNNSTNCSASNGGATNNSNSSSVFASLFASSTSSGTLQSQTPAFSNLVRAMGPPDHHADITVPSSSEAVSLCLSTSNASPIFAAGGQEHRQYASSPPQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSSSSASTPSGQQNGLQWGQPQLESESVSVPAGLGLSLPCDGDSGLKELMTGTPSMFGPKHTTLDFLGLGMAAGGGLSALITSIGGGLDVAAATTFGNGEFSGKDIGRRSS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03698 506 MobiDBLite consensus disorder prediction 1 27 - -
Viun3g03698 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 469 IPR031140 -
Viun3g03698 506 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Viun3g03698 506 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Viun3g03698 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Viun3g03698 506 MobiDBLite consensus disorder prediction 1 41 - -
Viun3g03698 506 Gene3D Classic Zinc Finger 112 193 - -
Viun3g03698 506 SMART c2h2final6 134 154 IPR013087 -
Viun3g03698 506 SMART c2h2final6 99 129 IPR013087 -
Viun3g03698 506 SMART c2h2final6 58 80 IPR013087 -
Viun3g03698 506 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Viun3g03698 506 MobiDBLite consensus disorder prediction 220 241 - -
Viun3g03698 506 FunFam protein indeterminate-domain 12-like 37 105 - -
Viun3g03698 506 Gene3D Classic Zinc Finger 38 104 - -
Viun3g03698 506 MobiDBLite consensus disorder prediction 195 241 - -
Viun3g03698 506 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03698 Viun-Chr3 43929997 43932974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03698 1 505 IDZ Gene Family AT5G66730 56.697 1.31e-177 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun3g03698 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03698 K25869 - gmx:100783947 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03698 3 43929997 43932974 Viun3g03698 3 43929997 43932974 ECH
Viun3g03698 3 43929997 43932974 Viun2g01989 2 28420880 28424869 ECH
Viun2g01989 2 28420880 28424869 Viun3g03698 3 43929997 43932974 PCT