Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03693 ATGTCTTCCCCTAATAATAAGAAATCTGCTCCACATAACAACACACCCGATGACGCCACCCCCGACGACGCCACTCCCGATAACTCCACTCCCGATGACGCCACACCCGATGACGCCACACCCGACAACGCCACGCCCGACAATGCCACACCCGATAAATCATCAAAGGGATCACATAAAAGTTCCTCGTCCAGTCATTCACCACCGTCCAAAGATTCACATAAATCGCTGTCGCATGATAAGCTGCCAGAGTCAAAGAGCGAGGATAGCACCAATAAAGCAGTATTGGGAGCAGGGATCGGAGTTGGGTTTGTCCTTCTGGTGTTGCTCATCGTGTGTTTGATTTGTTGTTGCAGGAGGAAAAAGCGAAAGCAGCAGCAGCAGAAGAATAATAATAATAATAACTACTATTACGCCTCTCCTTCTAAAGGAAAACCTAGCAATCATTACAACGCTCAACAATCTCTTCCTCATTGGCAACCAGGAGGGGGTCCTCCTCCTCCTCATATGGGTGAGCATGTTGTGAGGGTTCAACAACAACAGGGGATGGGGATGCAGATGGGGATGGGGATGCAGATGGGAATGGGAATGGGTCCTCCTAGTGGTGGCTGGGGAACATCACATCCTCAAATGAGTAGTGGAGATATGAGCTCTAATTATTCAGTGGGGATGGGTTCCACATCGCCAGGCCTTAATCTCACACTCAAGAGTGGTACCTTCACTTATGAGGAGCTAGCAGCTGCCACCAAAGGATTTGCCAATGACCAGATTATTGGACAAGGTGGCTTTGGTTATGTCCATAAGGGAGTTTTGCCTAATGGAAAGGAAGTTGCTGTTAAGAGTCTAAAAGCAGGTAGTGGACAAGGAGAACGCGAGTTCCAAGCTGAGATTGAAATCATTAGTCGAGTTCATCATCGTCATCTTGTGTCTCTTGTTGGATATTGCATTTGTGGAGGCCAGAGAATGCTGGTCTATGAATTTGTTCCCAACTCAACTTTGGAACATCACCTTCATGGTAAAGGTATGCCTACCATGGATTGGCCTACTAGAATGCGAATTGCCATTGGATCTGCCAAAGGGCTTGCCTACCTTCATGAAGATTGTAGCCCTCGCATTATCCATCGTGACATTAAAGCTTCTAACGTCCTTCTTGATCAAAGCTTTGAAGCCAAGGTGTCTGATTTTGGACTTGCAAAGTTGACCACTGATAATAATACTCATGTCTCAACTCGTGTCATGGGAACATTCGGGTACTTGGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAGTCTGATGTTTTCTCATTTGGGGTCATGCTTTTGGAACTCATAACAGGGAAACGACCTGTAGATCCAACACATGTCATGGAAGACAGTTTAGTGGATTGGGCTCGACCACTCCTGAACAAAGGATTGGAGGATGGCAACTTTGGAATGTTGGTGGATCCATTTTTGGAAGGCAACTACAATGTCCAGGAAATGACAAGAATGGCAGCTTGTGCAGCTGCAAGCATTCGTCATTCTGCTAAGAAGCGTTCAAAAATGAGTCAGATTGTGAGGGCACTGGAAGGAGATGTATCATTGGATGACTTAAAAGATGGAATGAAACTTACACCAGGGAATAATAGCAGTGCCTACGCTTCTTCTGGGAGCTCAGAATACGATACCATGCAATACAATGCTGATATGTTAAAGTTCAGACAGGCAATAATGTCGAGCCAAGAATTTAATGACAGTGGTGAGCTTTCCAGTAAGGAGATGGGTTATCGTTAG 1779 0.4581 MSSPNNKKSAPHNNTPDDATPDDATPDNSTPDDATPDDATPDNATPDNATPDKSSKGSHKSSSSSHSPPSKDSHKSLSHDKLPESKSEDSTNKAVLGAGIGVGFVLLVLLIVCLICCCRRKKRKQQQQKNNNNNNYYYASPSKGKPSNHYNAQQSLPHWQPGGGPPPPHMGEHVVRVQQQQGMGMQMGMGMQMGMGMGPPSGGWGTSHPQMSSGDMSSNYSVGMGSTSPGLNLTLKSGTFTYEELAAATKGFANDQIIGQGGFGYVHKGVLPNGKEVAVKSLKAGSGQGEREFQAEIEIISRVHHRHLVSLVGYCICGGQRMLVYEFVPNSTLEHHLHGKGMPTMDWPTRMRIAIGSAKGLAYLHEDCSPRIIHRDIKASNVLLDQSFEAKVSDFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTHVMEDSLVDWARPLLNKGLEDGNFGMLVDPFLEGNYNVQEMTRMAACAAASIRHSAKKRSKMSQIVRALEGDVSLDDLKDGMKLTPGNNSSAYASSGSSEYDTMQYNADMLKFRQAIMSSQEFNDSGELSSKEMGYR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03693 592 MobiDBLite consensus disorder prediction 128 158 - -
Viun3g03693 592 Pfam Protein tyrosine and serine/threonine kinase 255 455 IPR001245 GO:0004672|GO:0006468
Viun3g03693 592 FunFam Proline-rich receptor-like protein kinase PERK1 328 535 - -
Viun3g03693 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 372 384 IPR008271 GO:0004672|GO:0006468
Viun3g03693 592 MobiDBLite consensus disorder prediction 195 223 - -
Viun3g03693 592 MobiDBLite consensus disorder prediction 122 172 - -
Viun3g03693 592 MobiDBLite consensus disorder prediction 205 223 - -
Viun3g03693 592 MobiDBLite consensus disorder prediction 1 91 - -
Viun3g03693 592 MobiDBLite consensus disorder prediction 1 71 - -
Viun3g03693 592 SMART serkin_6 252 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03693 592 ProSitePatterns Protein kinases ATP-binding region signature. 258 280 IPR017441 GO:0005524
Viun3g03693 592 Gene3D Phosphorylase Kinase; domain 1 225 327 - -
Viun3g03693 592 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 103 571 IPR047117 -
Viun3g03693 592 ProSiteProfiles Protein kinase domain profile. 252 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03693 592 FunFam proline-rich receptor-like protein kinase PERK1 230 327 - -
Viun3g03693 592 SUPERFAMILY Protein kinase-like (PK-like) 232 524 IPR011009 -
Viun3g03693 592 MobiDBLite consensus disorder prediction 72 88 - -
Viun3g03693 592 Gene3D Transferase(Phosphotransferase) domain 1 328 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03693 Viun-Chr3 43861442 43865299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03693 98 585 Trihelix Transcription Factor Family AT1G70460 49.796 5.65e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Viun3g03693 PK_Tyr_Ser-Thr 7.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03693 - - gmx:100805872 730.324