Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03677 ATGCATCGTTCTTGCGGGAACTCCCAGGCTCACGTGATGGGCACCTGCACATGCACCATGCTTCACACCGAAACCAACTCCTACTCCATCCTCTTCTCTATGCCCAACACCCACGCCCCCTATTATGATTACCAACACGACATCTATCCCTCTTCCTCCGTCGACTGCACGCTCTCCCTCGGAACCCCTTCCACGCGTTTCACCGAAGGCGAGGAGTTGCGAAACCGCCACGAACATCGCTCTTCCGTCACCAACTTCCGCTGGGACATGCTGCAATCCAAACACACCTCGCAATCTCAAACCAATAAATCTACCAGAGCAACCAATGCCGCCTCCAACAACGACTCTCTCCTCGCTCGTCGCTGCGCCAACTGCGACACCACTTCTACCCCCCTCTGGAGAAACGGTCCCCGTGGCCCTAAGTCACTGTGCAATGCTTGCGGGATCAGATATAAGAAGGAAGAGAGAAGAGCATCAGCTGCCGCCGCCACGTCGGCGGCGGTTCCCGGCAGCGTGATGGAATCGTCGCGCTCGTACGGCAGCCAAAGCAGTTCGTGGTACGCACACCCGCAGATGGGTAACGAGTTACGTTTCATGGAGGATTCCGACGATAGAGATTCGGAGGATGGCATTCCGTTCTTCTCTTGGAACCTTAACGTCCCAGACCGAACGAGCATGGTGCACGACTACACGAGATGA 699 0.5622 MHRSCGNSQAHVMGTCTCTMLHTETNSYSILFSMPNTHAPYYDYQHDIYPSSSVDCTLSLGTPSTRFTEGEELRNRHEHRSSVTNFRWDMLQSKHTSQSQTNKSTRATNAASNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRASAAAATSAAVPGSVMESSRSYGSQSSSWYAHPQMGNELRFMEDSDDRDSEDGIPFFSWNLNVPDRTSMVHDYTR 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03677 232 Gene3D - 118 177 IPR013088 GO:0006355|GO:0008270
Viun3g03677 232 ProSiteProfiles GATA-type zinc finger domain profile. 116 152 IPR000679 GO:0006355|GO:0043565
Viun3g03677 232 PANTHER GATA TRANSCRIPTION FACTOR 18 11 232 IPR044272 GO:0003700|GO:0009908
Viun3g03677 232 ProSitePatterns GATA-type zinc finger domain. 122 147 IPR000679 GO:0006355|GO:0043565
Viun3g03677 232 CDD ZnF_GATA 121 153 IPR000679 GO:0006355|GO:0043565
Viun3g03677 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 119 158 - -
Viun3g03677 232 SMART GATA_3 116 169 IPR000679 GO:0006355|GO:0043565
Viun3g03677 232 Pfam GATA zinc finger 122 156 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03677 Viun-Chr3 43704997 43707008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03677 4 232 C2C2-Gata Transcription Factor Family AT3G50870 40.426 3.67e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun3g03677 GATA 6.3e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03677 - - gmx:100799154 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03677 3 43704997 43707008 Viun3g03677 3 43704997 43707008 ECH
Viun2g01965 2 28214382 28216001 Viun3g03677 3 43704997 43707008 PCT