Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03673 ATGGACATGAGAGAGCAAGATAAGGTAATAGAGATGCCTAGCACTTTGGGTTATAACCTCCCCAATAGAAATTCATCTTCCTCCAAGTTATCATCACCAATAGGGGAAAGAAGTGAGCAACCTCCTCAATCTCACACATTGCTTTTCACTGATCCACCCCAAACAACTTCACATCATCATCATCATCATCCTCTCAACCCCCCTATTTCTCTTCCACCAAACCCTCCCAGACCCAGAAGAGATCCAGATCCAACTCCTGTTTCTCCTCCTGCCATAACCACCCCGAGAACACAACCACACTCCACAGGAACTTTCACGACAACATTCAGATACCGAGAATGTCTGAAGAATCATGCTGCCAGCATGGGGGGCCATGTCACAGATGGGTGTGGGGAGTTTATGCCAAATGGAGAAGAAGGCACCCCGGAATCCTTCAAGTGTGCTGCTTGTGAGTGCCACCGCAATTTCCACAGAAAAGAATCTGAAGGCGAATCATCACAGCATGTTCTCAACTACCACCTCACTTACCCCGGCAAAACCAATAGAAACACCGTTCTTCATTCTCCGCAATCTCATCTCCACGGCGTGGTGGCTACCCCTTCTGGTGGGCCGGTTCAGCCCGCGATGTTGGGGTTTGGGGGAACCCCAGCTGAGTCGTCGAGCGAAGATCTCAACATGTTTCAGAGCGATGATGCAGGGCAATTGTTATCAGTGCAGCCACCACTGTCATCGTCGAAGAAGAGGTTCAGGACCAAGTTTTCACCGCAACAAAAGGATAAGATGATGGAGTTTGCTGAGAAACTGGGGTGGAAGATCCAGAGACAAGATGAACAGGAACTGCATCAGTTTTGCTCTCAGGTTGGTGTAAAAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAAATGTAA 933 0.4834 MDMREQDKVIEMPSTLGYNLPNRNSSSSKLSSPIGERSEQPPQSHTLLFTDPPQTTSHHHHHHPLNPPISLPPNPPRPRRDPDPTPVSPPAITTPRTQPHSTGTFTTTFRYRECLKNHAASMGGHVTDGCGEFMPNGEEGTPESFKCAACECHRNFHRKESEGESSQHVLNYHLTYPGKTNRNTVLHSPQSHLHGVVATPSGGPVQPAMLGFGGTPAESSSEDLNMFQSDDAGQLLSVQPPLSSSKKRFRTKFSPQQKDKMMEFAEKLGWKIQRQDEQELHQFCSQVGVKRQVFKVWMHNSKQAMKKKQM 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03673 310 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 89 303 - -
Viun3g03673 310 Gene3D - 236 307 - -
Viun3g03673 310 MobiDBLite consensus disorder prediction 17 54 - -
Viun3g03673 310 MobiDBLite consensus disorder prediction 66 93 - -
Viun3g03673 310 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 110 160 IPR006456 -
Viun3g03673 310 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 111 160 IPR006456 -
Viun3g03673 310 NCBIfam homeobox domain, ZF-HD class 246 303 IPR006455 -
Viun3g03673 310 Pfam ZF-HD protein dimerisation region 109 161 IPR006456 -
Viun3g03673 310 FunFam Zinc-finger homeodomain protein 2 237 307 - -
Viun3g03673 310 MobiDBLite consensus disorder prediction 1 104 - -
Viun3g03673 310 SUPERFAMILY Homeodomain-like 240 307 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03673 Viun-Chr3 43637779 43639763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03673 110 310 ZF-HD Transcription Factor Family AT2G18350 52.153 4.88e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun3g03673 ZF-HD_dimer 9.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03673 - - ccaj:109810490 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03673 3 43637779 43639763 Viun3g03673 3 43637779 43639763 ECH
Viun3g03673 3 43637779 43639763 Viun2g01963 2 28186938 28191921 ECH
Viun2g01963 2 28186938 28191921 Viun3g03673 3 43637779 43639763 PCT