Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03670 ATGGGATATGATGGCAGTGAACTGGTAGAGACATTACCAAGTCCTTGCTCCTTTAAGGTGCATCGTGCGATGTGCACAGAACTCAGGAAATTAGTTGCTAGAATCCTGCGGATAATTCCACGTATAGAAGAAGCACGCCCTTGCGGAATGCAGGCTCTATGTTTGCTCAACAGTGCAATTTATAAAGCTGCACAACTGCTGATATACTGCTCTGAATCTAGCAAACTCTACCTGGCAATGACAGGGGATTCCATACTCTCAAAATTTCAAAAGGCAAGACAATCGATGGTAAAAAACTTGGTCCAGATTCTGAATATGGTTCCGGTGATGTTGGCCGCAGAGATTTCTCGACTAATTGGTGATCTTGAGTGTGTTACATTTGTCCTCGACTCAGCTGAAGTAGCAGCTGGGAAGGTTTTGAAACAATTGCTCCAGCAAGATTCTTCAACATCAGATAAAGATTCAGTGGAAGAATCTGAAATAAAACATTTTCAGTTTGTAGCAGCAAGACTTAATATTACATCCTCATCGGCCATCTTAATAGAGAGACGATCTATTCAGAAGTTGCTAAATAAAGTCAAACCAGCTGATCAGCCGAAAGAGATTGTCTTGAAAAATCTTTTGTATCTCCTGCTAAAGAACAAAAAATCCATCACCGGAGAACAAATTGAGGTCTATATGCAAAGTGAAGGACCAATCACAACTGAAAACTCAGTTGACGAGTCTCAAAGCATCCTTCACGTCGAGTCAGAACCATACTTGAACCATGATCAGCATAGAACTCATGCCAATGAGTTGGACAGACCTACACCTCCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAGAAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATACTATATGCCCAAAAACCAAAAAGAAACTGGATCATATGGCATTGACTCCAAATGTGGTCTTCAAGGACCTAATATCAAAGTGGTGTGAAACTAATGGAGTCTCCATTCCTGACCCGAGCAGACAAGTGCAACATTTTCACTCATGGGAAGCTTCCTCCAATTCCATTAAGAGTTTTGGAAGTTCTTTGTATGATTTAAACTTCCAAATGGATCTTAGTAACGTGTCACTTGGATCTTTAGATACCAGTTATAATTCAGATTCCTCTCATTCTAATGCCAATCATGGCTTAGATTTGATATTGAACAAGACCAGCGCCAATTCTCGTAGGCACCAATCTCGTGCACGGATTCATGACGTTGATCTGATGCGTTTGTCTAAACTCCATGAACGTCGATGGGAATCTCAATGCCAACTCATTGAAGATATGAGAATAGATTTCAAATGCAATAACCATATCTTTTGCTCTGTCCCATCTGAAGATTTCATTGACCCACTCACGAGATTTCTGAGCACTGCCTGTGAGAGGCATGATGTTAAAGCTCTGAGATCTGGAACTAAATTGCTATTGGAATTTGTGAAGTGCTGCCGCAATGGTATGACCATTTTAACTGAAGATGCATGCATTATGTTGGCAAGTCTTCTTGACACAGAAGTGATTGGTGAAGCTCTTACCATAATGGAAGAGCTGAAAGGAAATTGGTGTGAGAAAGCTAACATTGCAGCTTCCACTTTACTCACTTCTGTTTCAAAGATCCTTGATGTTGGTAGCAAACAGTTCCAAGGAAAAGCTATTAAAATTATGTTTAATTTTTCATCCAATAGTCAAATGTGTGCCTACATGGTATCTCTGGGGTGCATCCCAAAATTACTGCAATTTTTTGGAGATAAAACCCTTTCGAGAGACTGTATACATATTTTGAAAAACCTTTGTGAGACAGAAGAGGGTAAGGTTACTGTGGTTGAAACAAAGGGATGCATGTATTCTATTGTTGAAATACTTGGGACTGGCAGTGACGAGGAAAAGGAACCGGCACTGCGTATTCTACTCTCTTTATGCTCTCAACGAGTGGAATACTGTGAGATGGTTATGGAAGAGGGGATTATTCCTTCTCTTGTCGACATCTCCAATTCAGGAAGTGACATGGCAAAGGCTTATGCACTTGAACTACTCCGTCTTTTAAAGGAAGATAGAGAGTTTGAGAATGAAGACTATTATGAGCCAAATTTTAATGCCTCTCAAGAATCTACCCATCGCTATGAAGAAAAGAAATCATCAAAGAAACCTTCCATTTTGAAGAGACTGTCGATCTTCTCAAAATCCAGTTCAGTTGCACCAAATAACAGGAGATGCAAATGA 2286 0.4011 MGYDGSELVETLPSPCSFKVHRAMCTELRKLVARILRIIPRIEEARPCGMQALCLLNSAIYKAAQLLIYCSESSKLYLAMTGDSILSKFQKARQSMVKNLVQILNMVPVMLAAEISRLIGDLECVTFVLDSAEVAAGKVLKQLLQQDSSTSDKDSVEESEIKHFQFVAARLNITSSSAILIERRSIQKLLNKVKPADQPKEIVLKNLLYLLLKNKKSITGEQIEVYMQSEGPITTENSVDESQSILHVESEPYLNHDQHRTHANELDRPTPPEEYTCPISLRLMYDPVVIASGETYERMWIQKWFDEGNTICPKTKKKLDHMALTPNVVFKDLISKWCETNGVSIPDPSRQVQHFHSWEASSNSIKSFGSSLYDLNFQMDLSNVSLGSLDTSYNSDSSHSNANHGLDLILNKTSANSRRHQSRARIHDVDLMRLSKLHERRWESQCQLIEDMRIDFKCNNHIFCSVPSEDFIDPLTRFLSTACERHDVKALRSGTKLLLEFVKCCRNGMTILTEDACIMLASLLDTEVIGEALTIMEELKGNWCEKANIAASTLLTSVSKILDVGSKQFQGKAIKIMFNFSSNSQMCAYMVSLGCIPKLLQFFGDKTLSRDCIHILKNLCETEEGKVTVVETKGCMYSIVEILGTGSDEEKEPALRILLSLCSQRVEYCEMVMEEGIIPSLVDISNSGSDMAKAYALELLRLLKEDREFENEDYYEPNFNASQESTHRYEEKKSSKKPSILKRLSIFSKSSSVAPNNRRCK 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03670 761 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Viun3g03670 761 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Viun3g03670 761 SMART arm_5 622 663 IPR000225 GO:0005515
Viun3g03670 761 SMART arm_5 665 705 IPR000225 GO:0005515
Viun3g03670 761 SMART arm_5 583 621 IPR000225 GO:0005515
Viun3g03670 761 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Viun3g03670 761 MobiDBLite consensus disorder prediction 718 738 - -
Viun3g03670 761 SUPERFAMILY RING/U-box 265 348 - -
Viun3g03670 761 Gene3D - 456 719 IPR011989 -
Viun3g03670 761 CDD RING-Ubox_PUB 272 321 IPR045210 -
Viun3g03670 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 345 IPR013083 -
Viun3g03670 761 FunFam RING-type E3 ubiquitin transferase 270 342 - -
Viun3g03670 761 SUPERFAMILY ARM repeat 444 707 IPR016024 -
Viun3g03670 761 PANTHER U BOX DOMAIN-CONTAINING 23 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03670 Viun-Chr3 43554864 43560275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03670 15 717 U-box Gene Family AT4G36550 36.313 5.25e-129 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03670 - - gmx:100798951 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03670 3 43554864 43560275 Viun3g03670 3 43554864 43560275 ECH
Viun3g03670 3 43554864 43560275 Viun2g01957 2 28150759 28155379 ECH
Viun2g01957 2 28150759 28155379 Viun3g03670 3 43554864 43560275 PCT